RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CCL2P13500 99 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 MST1LQ2TV78 715 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 PPP1R27Q86WC6 154 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 STPG3Q8N7X2 389 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 WFDC1Q9HC57 220 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 RNF7Q9UBF6 113 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 TMPRSS2O15393 492 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 GZMHP20718 246 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 RPL8P62917 257 aaKnown RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 ETDBQ3ZM63 59 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 MBNL2Q5VZF2 373 aaKnown RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 C16orf47Q6ZP98 133 aaPredicted RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 VSTM2LQ96N03 204 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 TTTY12Q9BZ98 90 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 RP1L1Q8IWN7 2480 aaPredicted RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 IGHV1-45A0A0A0MS14 117 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 SMAD7O15105 426 aaKnown RBP11.26□□□□□ -0.61
USP40-208ENST00000450966 ZP4Q12836 540 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 ZNF645Q8N7E2 425 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 OR10J6PQ8NGY7 276 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 IFI27L1Q96BM0 104 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 TRBV20OR9-2A0A075B6H5 130 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 TRBV20-1A0A075B6N2 111 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 FAM157AC9JC47 383 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 BGLAPP02818 100 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 CDKN1AP38936 164 aa11.26□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PPM0 123 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 IGFBP2P18065 325 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 UNC119Q13432 240 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 C5orf47Q569G3 176 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 TNFRSF19Q9NS68 423 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 ZG16O60844 167 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 TMEM170BQ5T4T1 132 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 OCC1Q8TAD7 63 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 CHD5Q8TDI0 1954 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 CEACAM18A8MTB9 384 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 ANOS1P23352 680 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 C3AR1Q16581 482 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 FAM222BQ8WU58 562 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 CTHRC1Q96CG8 243 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 C18orf12Q96KH6 178 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PR77 199 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 CT62P0C5K7 136 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 GAS1P54826 345 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 RHOGP84095 191 aa11.25□□□□□ -0.61
USP40-208ENST00000450966 PATE4P0C8F1 98 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 S100A7L2Q5SY68 101 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 CBLN3Q6UW01 205 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 SCGB3A1Q96QR1 104 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 TRPM7Q96QT4 1865 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 LIPT2A6NK58 231 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 EVI2AP22794 236 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 KLF17Q5JT82 389 aaPredicted RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 OR5P3Q8WZ94 311 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 CASP8AP2Q9UKL3 1982 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 SHROOM3Q8TF72 1996 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PRD5 423 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PRF3 423 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 A0A1W2PRM7 423 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 PEX7O00628 323 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 NDUFC2O95298 119 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 CD33P20138 364 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 HERV-K104P63124 156 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 EIF4EBP2Q13542 120 aaPredicted RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 WDR82Q6UXN9 313 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 SLC25A45Q8N413 288 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 SCARF2Q96GP6 870 aaPredicted RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 FBXL7Q9UJT9 491 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 RBBP6Q7Z6E9 1792 aaKnown RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 NDUFA3O95167 84 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 PPP1R17O96001 155 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 LYL1P12980 280 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 DLX6P56179 175 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 CEACAM21Q3KPI0 293 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 ZNF818PQ6ZRF7 136 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 FMC1Q96HJ9 113 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 Q96M66 194 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 OR2H1Q9GZK4 316 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 LY96Q9Y6Y9 160 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 KNL1Q8NG31 2342 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 POLR2AP24928 1970 aaKnown RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.24□□□□□ -0.61
USP40-208ENST00000450966 SSTR5P35346 364 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 ZNF56Q15929 161 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 VKORC1L1Q8N0U8 176 aa11.24□□□□□ -0.61
USP40-208ENST00000450966 NUP214P35658 2090 aaPredicted RBP11.23□□□□□ -0.61
USP40-208ENST00000450966 C2orf82Q6UX34 121 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 ABHD17AQ96GS6 310 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 NXT2Q9NPJ8 142 aaKnown RBP11.23□□□□□ -0.61
USP40-208ENST00000450966 F5P12259 2224 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 J3QT63 122 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 CELA3AP09093 270 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 PLAURQ03405 335 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 CCDC144NLQ6NUI1 221 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 RNASE7Q9H1E1 156 aaKnown RBP11.23□□□□□ -0.61
USP40-208ENST00000450966 CGAP01215 116 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 SCTP09683 121 aa11.23□□□□□ -0.61
USP40-208ENST00000450966 ZXDCQ2QGD7 858 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms