RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RAB31Q13636 194 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 HLA-DRB5Q30154 266 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 OCC1Q8TAD7 63 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 HIVEP3Q5T1R4 2406 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 PPIAL4EA0A075B759 164 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 C15orf61A6NNL5 157 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 PPIAL4DF5H284 164 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 PPIAL4FP0DN26 164 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 ERVFC1-1P60608 527 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 YPEL4Q96NS1 127 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 PPIAL4AQ9Y536 164 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 HRASP01112 189 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 VDAC2P45880 294 aaPredicted RBP10.94□□□□□ -0.66
VPS54-203ENST00000409558 RAB7AP51149 207 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 LEMD1Q68G75 181 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 IL19Q9UHD0 177 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 FAM208BQ5VWN6 2430 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 A0A087WWC5 75 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 C17orf100A8MU93 164 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 TNFRSF1AP19438 455 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 TMEM200BQ69YZ2 307 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 ASCL2Q99929 193 aa10.94□□□□□ -0.66
VPS54-203ENST00000409558 NDUFB3O43676 98 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 ZNF714Q96N38 554 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 SSBP3Q9BWW4 388 aaPredicted RBP10.93□□□□□ -0.66
VPS54-203ENST00000409558 TRAPPC1Q9Y5R8 145 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 PYYP10082 97 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 CNTFRP26992 372 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 PLGLAQ15195 96 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 MORN5Q5VZ52 161 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 TRAT1Q6PIZ9 186 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 UNQ6494/PRO21346Q6UXR6 183 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 HIST3H2BBQ8N257 126 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 P2RX4Q99571 388 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 NABP2Q9BQ15 211 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 RNASE7Q9H1E1 156 aaKnown RBP10.93□□□□□ -0.66
VPS54-203ENST00000409558 MANBALQ9NQG1 85 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 TIMP3P35625 211 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 LINC01551Q86U37 167 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 TCEAL7Q9BRU2 100 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 SFXN3Q9BWM7 321 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 RYDENQ9NUL5 291 aaKnown RBP10.93□□□□□ -0.66
VPS54-203ENST00000409558 TIMM8BQ9Y5J9 83 aaPredicted RBP10.93□□□□□ -0.66
VPS54-203ENST00000409558 IGKV1OR2-108A0A075B7D4 117 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 APOA2P02652 100 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 GCHFRP30047 84 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 NPIPB3Q92617 1050 aa10.93□□□□□ -0.66
VPS54-203ENST00000409558 FAM103A1Q9BTL3 118 aaKnown RBP10.93□□□□□ -0.66
VPS54-203ENST00000409558 SEC14L6B5MCN3 397 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 USF2Q15853 346 aaPredicted RBP10.92□□□□□ -0.66
VPS54-203ENST00000409558 PQLC2Q6ZP29 291 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 TEX50A0A1B0GTY4 177 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 B4DEV8 164 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 IL3RAP26951 378 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 MRPL54Q6P161 138 aaKnown RBP10.92□□□□□ -0.66
VPS54-203ENST00000409558 ZNF788Q6ZQV5 615 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 SPACA3Q8IXA5 215 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 FLYWCH2Q96CP2 140 aaKnown RBP10.92□□□□□ -0.66
VPS54-203ENST00000409558 HIST1H2BLQ99880 126 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 F2RL2O00254 374 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 SCGB1D1O95968 90 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 LHBP01229 141 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 THBDP07204 575 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 TMEM256Q8N2U0 113 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 Q8N7P7 452 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 TIMM9Q9Y5J7 89 aa10.92□□□□□ -0.66
VPS54-203ENST00000409558 CELSR1Q9NYQ6 3014 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 IER3P46695 156 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 RPUSD1Q9UJJ7 312 aaKnown RBP10.91□□□□□ -0.66
VPS54-203ENST00000409558 CSPG4Q6UVK1 2322 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 PFN1P07737 140 aaKnown RBP10.91□□□□□ -0.66
VPS54-203ENST00000409558 RHOBP62745 196 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 TNXAQ16473 311 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 CREBBPQ92793 2442 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 IGLV3-9A0A075B6K5 115 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 KCNIP4Q6PIL6 250 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 SEBOXQ9HB31 216 aaPredicted RBP10.91□□□□□ -0.66
VPS54-203ENST00000409558 TMEM106BQ9NUM4 274 aa10.91□□□□□ -0.66
VPS54-203ENST00000409558 TMEM250H0YL14 139 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 RANP62826 216 aaKnown RBP10.9□□□□□ -0.66
VPS54-203ENST00000409558 LRRC10Q5BKY1 277 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 OR51M1Q9H341 326 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 CTSZQ9UBR2 303 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 HILPDAQ9Y5L2 63 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 NDUFS6O75380 124 aaKnown RBP10.9□□□□□ -0.66
VPS54-203ENST00000409558 CXorf1O96002 111 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 SP5Q6BEB4 398 aaPredicted RBP10.9□□□□□ -0.66
VPS54-203ENST00000409558 C1orf159Q96HA4 380 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 FCN3O75636 299 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 OR8I2Q8N0Y5 310 aa10.9□□□□□ -0.66
VPS54-203ENST00000409558 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 ZNF705FA8MVS1 300 aaPredicted RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 ZNF705DP0CH99 300 aaPredicted RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 ZNF705BP0CI00 300 aaPredicted RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 RPL8P62917 257 aaKnown RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 TGIF2LXQ8IUE1 241 aa10.9□□□□□ -0.67
VPS54-203ENST00000409558 KDF1Q8NAX2 398 aaPredicted RBP10.9□□□□□ -0.67
VPS54-203ENST00000409558 SFRP2Q96HF1 295 aa10.9□□□□□ -0.67
VPS54-203ENST00000409558 ONECUT1Q9UBC0 465 aa10.9□□□□□ -0.67
VPS54-203ENST00000409558 CEACAM4O75871 244 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms