RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 A0A1W2PRE2 83 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 CA1P00915 261 aaPredicted RBP16.58■□□□□ 0.25
SHANK1-203ENST00000391813 IGKV1-13P0DP09 117 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 IGFBP2P18065 325 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 MBNL2Q5VZF2 373 aaKnown RBP16.58■□□□□ 0.25
SHANK1-203ENST00000391813 SNAI2O43623 268 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 TIMP3P35625 211 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 ZFP36L1Q07352 338 aaKnown RBP16.58■□□□□ 0.25
SHANK1-203ENST00000391813 CDCP2Q5VXM1 449 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 LINC00305Q7Z4B0 112 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.58■□□□□ 0.25
SHANK1-203ENST00000391813 CCL13Q99616 98 aa16.58■□□□□ 0.25
SHANK1-203ENST00000391813 MST1LQ2TV78 715 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 TMEM144Q7Z5S9 345 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 VKORC1L1Q8N0U8 176 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 FAM169BQ8N8A8 192 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 RNASEH2CQ8TDP1 164 aaKnown RBP16.58■□□□□ 0.24
SHANK1-203ENST00000391813 REPIN1Q9BWE0 567 aaKnown RBP16.58■□□□□ 0.24
SHANK1-203ENST00000391813 C1QTNF5Q9BXJ0 243 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 UBTD1Q9HAC8 227 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 TGFBR3LH3BV60 316 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 FDCSPQ8NFU4 85 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 SRXN1Q9BYN0 137 aa16.58■□□□□ 0.24
SHANK1-203ENST00000391813 H7C2G1 150 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 LGALS3P17931 250 aaKnown RBP16.57■□□□□ 0.24
SHANK1-203ENST00000391813 FMC1Q96HJ9 113 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 AKIRIN1Q9H9L7 192 aaPredicted RBP16.57■□□□□ 0.24
SHANK1-203ENST00000391813 IGKV1D-8A0A087WSZ0 117 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 MEF2CQ06413 473 aaPredicted RBP16.57■□□□□ 0.24
SHANK1-203ENST00000391813 SLC25A53Q5H9E4 307 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 C10orf91Q5T1B1 145 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 CHCHD1Q96BP2 118 aaKnown RBP16.57■□□□□ 0.24
SHANK1-203ENST00000391813 GP6Q9HCN6 339 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 E9PQ18 207 aa16.57■□□□□ 0.24
SHANK1-203ENST00000391813 SRSF7Q16629 238 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHANK1-203ENST00000391813 LINC01551Q86U37 167 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 OSR1Q8TAX0 266 aaPredicted RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 LPAR2Q9HBW0 351 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 RAB9AP51151 201 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 EMP1P54849 157 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 KLF14Q8TD94 323 aaPredicted RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 RNASE7Q9H1E1 156 aaKnown RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 PATJQ8NI35 1801 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 NTN3O00634 580 aaPredicted RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 FCGR2BP31994 310 aaPredicted RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 ADIPOQQ15848 244 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 TIMM23BQ5SRD1 257 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 ATP1A1-AS1Q5TC04 95 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 ORMDL3Q8N138 153 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 TMEM186Q96B77 213 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 ZNF703Q9H7S9 590 aaPredicted RBP16.56■□□□□ 0.24
SHANK1-203ENST00000391813 TMEM160Q9NX00 188 aa16.56■□□□□ 0.24
SHANK1-203ENST00000391813 GPR179Q6PRD1 2367 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 IGHV2-5P01817 119 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 MIR17HGQ75NE6 70 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 DOCK6Q96HP0 2047 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 IGLV3-12A0A075B6K2 115 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 MRPL14Q6P1L8 145 aaKnown RBP16.55■□□□□ 0.24
SHANK1-203ENST00000391813 C20orf144Q9BQM9 153 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 FNDC4Q9H6D8 234 aaPredicted RBP16.55■□□□□ 0.24
SHANK1-203ENST00000391813 MGAMO43451 1857 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 RTTNQ86VV8 2226 aa16.55■□□□□ 0.24
SHANK1-203ENST00000391813 CFPP27918 469 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 GPR6P46095 362 aaPredicted RBP16.54■□□□□ 0.24
SHANK1-203ENST00000391813 MFAP4P55083 255 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 Q5PR19 223 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 ATP5L2Q7Z4Y8 100 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 SCN2AQ99250 2005 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 TRBV20OR9-2A0A075B6H5 130 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 PGPEP1LA6NFU8 196 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 J3KRW8 73 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 PRSS2P07478 247 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 SMAGPQ0VAQ4 97 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 CIARTQ8N365 385 aaPredicted RBP16.54■□□□□ 0.24
SHANK1-203ENST00000391813 ITLN1Q8WWA0 313 aa16.54■□□□□ 0.24
SHANK1-203ENST00000391813 EREGO14944 169 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 HSD52Q0P140 79 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 TMEM256Q8N2U0 113 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 COPS9Q8WXC6 57 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 VSIRQ9H7M9 311 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 CX3CL1P78423 397 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 RASL11AQ6T310 242 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 UNQ5815/PRO19632Q6UWF5 114 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 NUDT10Q8NFP7 164 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 C9JCJ5 164 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 TEX29Q8N6K0 151 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 SEMA5BQ9P283 1151 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 PAPPA-AS1Q5QFB9 102 aa16.53■□□□□ 0.24
SHANK1-203ENST00000391813 KLF2Q9Y5W3 355 aaPredicted RBP16.53■□□□□ 0.24
SHANK1-203ENST00000391813 SH2D7A6NKC9 451 aaPredicted RBP16.52■□□□□ 0.24
SHANK1-203ENST00000391813 RPP25LQ8N5L8 163 aaKnown RBP16.52■□□□□ 0.24
SHANK1-203ENST00000391813 OR52E5Q8NH55 327 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 IGHV1-69-2A0A0G2JMI3 117 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 OR9G4Q8NGQ1 327 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 C18orf15Q96N68 181 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 ELOVL5Q9NYP7 299 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 HEATR5BQ9P2D3 2071 aa16.52■□□□□ 0.24
SHANK1-203ENST00000391813 SCGB1A1P11684 91 aa16.52■□□□□ 0.23
SHANK1-203ENST00000391813 NMSQ5H8A3 153 aa16.52■□□□□ 0.23
SHANK1-203ENST00000391813 OR10J6PQ8NGY7 276 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms