RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RPL8P62917 257 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 ZNF726P1Q15940 193 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 DEFB113Q30KQ7 82 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 HCP5Q6MZN7 132 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 TEX45Q8NA69 505 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 TMEM167AQ8TBQ9 72 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 NRGNQ92686 78 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 GNG13Q9P2W3 67 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 TCF19Q9Y242 345 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 PRELID1Q9Y255 219 aa14.68□□□□□ -0.06
CCDC88C-203ENST00000389856 B4DSR2 109 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 FGF7P21781 194 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 GATA3P23771 443 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 DLX1P56177 255 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 KLRD1Q13241 179 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 CYB561D1Q8N8Q1 229 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 PSMG3-AS1Q96PY0 264 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 ACTR3CQ9C0K3 210 aaPredicted RBP14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 PLEKHA3Q9HB20 300 aa14.67□□□□□ -0.06
CCDC88C-203ENST00000389856 A0A1W2PPI3 338 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 SRRM4A7MD48 611 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 RAB11AP62491 216 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 PAX8Q06710 450 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 TMEM249Q2WGJ8 235 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 LCN15Q6UWW0 184 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 TBX15Q96SF7 602 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 MANBALQ9NQG1 85 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 TRAV3A0A0B4J244 114 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 C15orf62A8K5M9 175 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 OR2C1O95371 312 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 MSMBP08118 114 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 RAB5AP20339 215 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 PRCDQ00LT1 54 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 PRB3Q04118 309 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 ETV3LQ6ZN32 361 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 C1QL4Q86Z23 238 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 OR1L8Q8NGR8 309 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 ZDHHC16Q969W1 377 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 MBD6Q96DN6 1003 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 NPCDR1Q9BY65 106 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 VSIRQ9H7M9 311 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 KCNIP2Q9NS61 270 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 WDR83OSQ9Y284 106 aa14.66□□□□□ -0.06
CCDC88C-203ENST00000389856 TRAV20A0A0B4J274 112 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 A0A1W2PN81 502 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 CYB5BO43169 146 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 ACTL6BO94805 426 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 IFNA10P01566 189 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 CHRNA7P36544 502 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 VDAC2P45880 294 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 DLK1P80370 383 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 HABP2Q14520 560 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 ACOT6Q3I5F7 207 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 MMD2Q8IY49 270 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 RPP25LQ8N5L8 163 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 C20orf24Q9BUV8 137 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 SAV1Q9H4B6 383 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 TMEM242Q9NWH2 141 aa14.65□□□□□ -0.06
CCDC88C-203ENST00000389856 IGHV3-72A0A0B4J1Y9 119 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 TIMM23O14925 209 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 AKR1C3P42330 323 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 ELLP55199 621 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 OR10G9Q8NGN4 311 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 OR10G7Q8NGN6 311 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 HILPDAQ9Y5L2 63 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 COL12A1Q99715 3063 aa14.64□□□□□ -0.07
CCDC88C-203ENST00000389856 ZFP92A6NM28 416 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 TMEM250H0YL14 139 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 SLC25A17O43808 307 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 IGLV2-23P01705 113 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 BRS3P32247 399 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 PSMB3P49720 205 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 FFAR4Q5NUL3 377 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 FAM90A2PQ658T7 463 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 ACSM6Q6P461 480 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 OR2T10Q8NGZ9 312 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 C1orf159Q96HA4 380 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 YPEL4Q96NS1 127 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 HINT2Q9BX68 163 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 USP9YO00507 2555 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 ARHGAP32A7KAX9 2087 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 TENM4Q6N022 2769 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 TEX50A0A1B0GTY4 177 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 FNDC10F2Z333 226 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 VENTXO95231 258 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 MOSP00540 346 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 SSX2Q16385 188 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 SPINK9Q5DT21 86 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 PRSS57Q6UWY2 283 aa14.63□□□□□ -0.07
CCDC88C-203ENST00000389856 SMCO3A2RU48 225 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 SEC14L6B5MCN3 397 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 INS-IGF2F8WCM5 200 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 NPFFO15130 113 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 ERHP84090 104 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 LOXL1Q08397 574 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 PSG5Q15238 335 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 SSX7Q7RTT5 188 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 LHFPL4Q7Z7J7 247 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 LINC01356Q8N9X3 169 aa14.62□□□□□ -0.07
CCDC88C-203ENST00000389856 SLC24A4Q8NFF2 622 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms