RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM41BQ5BJD5 291 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 IL17RELQ6ZVW7 336 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 CLCC1Q96S66 551 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 VSIRQ9H7M9 311 aa8.2□□□□□ -1.1
VPS53-202ENST00000389040 SVEP1Q4LDE5 3571 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 BUB1B-PAK6H3BSN5 160 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 TCF21O43680 179 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 COX7A1P24310 79 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 ELLP55199 621 aaPredicted RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 HILS1P60008 231 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 RPS16P62249 146 aaKnown RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 RPP30P78346 268 aaKnown RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 HAGHQ16775 308 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 VWC2Q2TAL6 325 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 BRD3OSQ6XYD6 125 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 Q6YL49 198 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 CENPVQ7Z7K6 275 aaPredicted RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 ZNF429Q86V71 674 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 OR4P4Q8NGL7 312 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 OR5R1Q8NH85 324 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 SSMEM1Q8WWF3 244 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 NIPBLQ6KC79 2804 aaeCLIP8.19□□□□□ -1.1
VPS53-202ENST00000389040 TRAV3A0A0B4J244 114 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 C15orf61A6NNL5 157 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 C15orf62A8K5M9 175 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 OR13C7P0DN81 318 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 FGF7P21781 194 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 ZNF137PP52743 207 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 RPL15P61313 204 aaKnown RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 ZNF726P1Q15940 193 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 ZNF506Q5JVG8 444 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 OR4A47Q6IF82 309 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 OR10X1Q8NGY0 326 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 MBD3L1Q8WWY6 194 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 RCC1LQ96I51 464 aaKnown RBP8.19□□□□□ -1.1
VPS53-202ENST00000389040 RHOVQ96L33 236 aa8.19□□□□□ -1.1
VPS53-202ENST00000389040 FN1P02751 2386 aaKnown RBP8.18□□□□□ -1.1
VPS53-202ENST00000389040 A0A0U1RQK1 487 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 LY6LH3BQJ8 138 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 HSPB1P04792 205 aaKnown RBP8.18□□□□□ -1.1
VPS53-202ENST00000389040 CT45A6P0DMU7 189 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 CT45A5P0DMU8 189 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 CT45A7P0DMV0 189 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 VDAC2P45880 294 aaPredicted RBP8.18□□□□□ -1.1
VPS53-202ENST00000389040 KLRD1Q13241 179 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 ICAM4Q14773 271 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 AWAT1Q58HT5 328 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 SOHLH1Q5JUK2 328 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 FAM71F2Q6NXP2 309 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 SSX7Q7RTT5 188 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 AIFM2Q9BRQ8 373 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 HEYLQ9NQ87 328 aaPredicted RBP8.18□□□□□ -1.1
VPS53-202ENST00000389040 ZNRD1Q9P1U0 126 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 FOXA2Q9Y261 457 aaPredicted RBP8.18□□□□□ -1.1
VPS53-202ENST00000389040 WNK2Q9Y3S1 2297 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 ARHGAP32A7KAX9 2087 aa8.18□□□□□ -1.1
VPS53-202ENST00000389040 HRASP01112 189 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 IFNA10P01566 189 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 SRP19P09132 144 aaKnown RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 BRS3P32247 399 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 HOXA1P49639 335 aaPredicted RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 POU2AF1Q16633 256 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 RTL8BQ17RB0 113 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 DEFB112Q30KQ8 113 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 AKIRIN2Q53H80 203 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 LCN15Q6UWW0 184 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 ZNF833PQ6ZTB9 187 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 AJUBAQ96IF1 538 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 NPCDR1Q9BY65 106 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 TCF19Q9Y242 345 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 SONP18583 2426 aaKnown RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 MXRA5Q9NR99 2828 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 IGHV3OR16-10A0A075B7F0 116 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 LOC102723971A0A1B0GUV8 181 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 MAP1LC3B2A6NCE7 125 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 M0R036 132 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 MBP02144 154 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 MDKP21741 143 aaPredicted RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 IER3P46695 156 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 FGF8P55075 233 aaPredicted RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 HNF4GQ14541 408 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 KHDC3LQ587J8 217 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 RUSC1-AS1Q66K80 236 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 ACSM6Q6P461 480 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 ETV3LQ6ZN32 361 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 BCL6BQ8N143 479 aaPredicted RBP8.17□□□□□ -1.1
VPS53-202ENST00000389040 ZNF709Q8N972 641 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 RXFP4Q8TDU9 374 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 RPEQ96AT9 228 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 MAP1LC3BQ9GZQ8 125 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 RPS10P5Q9NQ39 176 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 SMCO4Q9NRQ5 59 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 SLC35D1Q9NTN3 355 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 TMEM14BQ9NUH8 114 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 GNG13Q9P2W3 67 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 PITPNC1Q9UKF7 332 aa8.17□□□□□ -1.1
VPS53-202ENST00000389040 TEP1Q99973 2627 aaKnown RBP8.16□□□□□ -1.1
VPS53-202ENST00000389040 ANK3Q12955 4377 aaKnown RBP8.16□□□□□ -1.1
VPS53-202ENST00000389040 C7orf77A4D0Y5 90 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 C17orf112F2Z3M2 114 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms