RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SRSF9Q13242 221 aaKnown RBP eCLIP7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 C10orf105Q8TEF2 133 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 C2orf88Q9BSF0 95 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF646O15015 1829 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 FABP4P15090 132 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MOGAT2Q3SYC2 334 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MUC21Q5SSG8 566 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 C12orf73Q69YU5 71 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 HSF4Q9ULV5 492 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MRPS16Q9Y3D3 137 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MGAMO43451 1857 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 TRBV7-1A0A0A6YYK4 115 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 IGHV1-3A0A0C4DH29 117 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MAP1LC3B2A6NCE7 125 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 LYPD2Q6UXB3 125 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MAP1LC3BQ9GZQ8 125 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 NIT2Q9NQR4 276 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 GGNQ86UU5 652 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 XCL2Q9UBD3 114 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 LOC102724200A0A096LPH7 203 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 TFF1P04155 84 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 BAP18Q8IXM2 172 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 COPS9Q8WXC6 57 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 GSX1Q9H4S2 264 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 PKIGQ9Y2B9 76 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 OVOL3O00110 214 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 RPS19P39019 145 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 COL4A6Q14031 1691 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 SPSB3Q6PJ21 355 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 GPX7Q96SL4 187 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 PXMP4Q9Y6I8 212 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 OTOFQ9HC10 1997 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 MYO5AQ9Y4I1 1855 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 SFT2D2O95562 160 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 RPS20P60866 119 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 FAM219BQ5XKK7 198 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 SLC2A9Q9NRM0 540 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 FAM208BQ5VWN6 2430 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 FNDC1Q4ZHG4 1894 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 TICRRQ7Z2Z1 1910 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 TEX48A0A1B0GUV7 120 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 C12orf77C9JDV5 145 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 CFHR3Q02985 330 aa7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 CIRBPQ14011 172 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 SPTBN1Q01082 2364 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-202ENST00000381753 PSG1P11464 419 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 SCGB1A1P11684 91 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 EFNB3Q15768 340 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 C8orf86Q6ZUL3 223 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 PAQR4Q8N4S7 273 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 VAMP8Q9BV40 100 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 RAMP3O60896 148 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 CD8AP01732 235 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 ELANEP08246 267 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 TCF19Q9Y242 345 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 ZSWIM8A7E2V4 1837 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 IGLV1-36A0A0B4J1U3 117 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 ADARB2-AS1A8MUL3 147 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 DYNLT3P51808 116 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 PRSS57Q6UWY2 283 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 OR2C3Q8N628 320 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 TEX45Q8NA69 505 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 DNAJC4Q9NNZ3 241 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 FAM215AQ9Y5M1 114 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 SAA2-SAA4A0A096LPE2 208 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 FCN1O00602 326 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF737O75373 536 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 PGA5P0DJD9 388 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 SAA2P0DJI9 122 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 BTF3P20290 206 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 PAPPA-AS1Q5QFB9 102 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 TMEM144Q7Z5S9 345 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 LDLRAD3Q86YD5 345 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 TAF15Q92804 592 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 RBBP6Q7Z6E9 1792 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 OTOGLQ3ZCN5 2332 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 NOTCH2Q04721 2471 aa7.6□□□□□ -1.19
LIMCH1-202ENST00000381753 BUB1B-PAK6H3BSN5 160 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 MLNRO43193 412 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 CXorf1O96002 111 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 TMEM241Q24JQ0 296 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 C8orf82Q6P1X6 216 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF429Q86V71 674 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 OR4D11Q8NGI4 311 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 OR8D4Q8NGM9 314 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 KLF4O43474 513 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 TMEM50BP56557 158 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 HIST1H3AP68431 136 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 IGLV3-32A0A0A0MS00 114 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 IGLV2-23P01705 113 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 VSIG8P0DPA2 414 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 HOXD3P31249 432 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 FOXG1P55316 489 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 NUDT10Q8NFP7 164 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 SLC50A1Q9BRV3 221 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 CHD5Q8TDI0 1954 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 C2orf83Q53S99 150 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF256Q9Y2P7 627 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 CACNA1CQ13936 2221 aa7.59□□□□□ -1.19
LIMCH1-202ENST00000381753 CACNA1HO95180 2353 aa7.59□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms