RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CR1LQ2VPA4 569 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 MBNL2Q5VZF2 373 aaKnown RBP13.42□□□□□ -0.26
SDC4-201ENST00000372733 WDR73Q6P4I2 378 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 NHLRC2Q8NBF2 726 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 PPP1R35Q8TAP8 253 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 RNF2Q99496 336 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 PPIAL4AQ9Y536 164 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 LNP1A1A4G5 178 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 BMPR1BO00238 502 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 ZNF253O75346 499 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 ZNF83P51522 516 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 GAGE1Q13065 139 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 SPATA45Q537H7 98 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 DUX4L9Q6RFH8 374 aaPredicted RBP13.41□□□□□ -0.26
SDC4-201ENST00000372733 MOGAT3Q86VF5 341 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 C1orf174Q8IYL3 243 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 LYG1Q8N1E2 194 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 OSTCQ9NRP0 149 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 TNCP24821 2201 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 TMEM265A0A087WTH1 108 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 IGLV2-8P01709 118 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 CTRLP40313 264 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 GNG10P50151 68 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 PLEKHA3Q9HB20 300 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 SERTAD4Q9NUC0 356 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 TECRQ9NZ01 308 aaKnown RBP13.41□□□□□ -0.26
SDC4-201ENST00000372733 ARL2-SNX15V9GYD0 113 aa13.41□□□□□ -0.26
SDC4-201ENST00000372733 HEATR1Q9H583 2144 aaKnown RBP13.4□□□□□ -0.26
SDC4-201ENST00000372733 RAB7AP51149 207 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 SUMO1P63165 101 aaKnown RBP13.4□□□□□ -0.26
SDC4-201ENST00000372733 DHRS13Q6UX07 377 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 FAM19A2Q8N3H0 131 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 OR2V2Q96R30 315 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 CDC42EP3Q9UKI2 254 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 IGLV1-44P01699 117 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 AMY1AP04745 511 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 MRPS11P82912 194 aaKnown RBP13.4□□□□□ -0.26
SDC4-201ENST00000372733 MLANAQ16655 118 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 OR10J3Q5JRS4 329 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 IBA57Q5T440 356 aaKnown RBP13.4□□□□□ -0.26
SDC4-201ENST00000372733 OR9G1Q8NH87 305 aa13.4□□□□□ -0.26
SDC4-201ENST00000372733 J3QR06 171 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 ZNF324O75467 553 aaPredicted RBP13.39□□□□□ -0.27
SDC4-201ENST00000372733 MMDQ15546 238 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 C1orf162Q8NEQ5 155 aaPredicted RBP13.39□□□□□ -0.27
SDC4-201ENST00000372733 CORO2AQ92828 525 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 STARD4Q96DR4 205 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 IGF2BP2-AS1Q96M15 143 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 ZNF883P0CG24 379 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 CGB3P0DN86 165 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 CGB7P0DN87 165 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 NIT1Q86X76 327 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 ZNRD1Q9P1U0 126 aa13.39□□□□□ -0.27
SDC4-201ENST00000372733 CADP27708 2225 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 ISLRO14498 428 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 OR5G3P0C626 314 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 C3orf79P0CE67 100 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 RPL19P84098 196 aaKnown RBP13.38□□□□□ -0.27
SDC4-201ENST00000372733 MORN5Q5VZ52 161 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 SSBP3Q9BWW4 388 aaPredicted RBP13.38□□□□□ -0.27
SDC4-201ENST00000372733 IGKV1-16P04430 117 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 NTF3P20783 257 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 MZT1Q08AG7 82 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 COL5A1-AS1Q5SY13 56 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 LINC00479Q96M42 142 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 RBM14Q96PK6 669 aaKnown RBP13.38□□□□□ -0.27
SDC4-201ENST00000372733 WNT10AQ9GZT5 417 aa13.38□□□□□ -0.27
SDC4-201ENST00000372733 SMIM27A0A1W2PRY6 76 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 FNDC10F2Z333 226 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 HLA-DQA1P01909 254 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 PRCDQ00LT1 54 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 ATOH7Q8N100 152 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 FAM168AQ92567 244 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 PRNDQ9UKY0 176 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 TRAV5A0A0B4J249 113 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 SPRY3O43610 288 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 IGHG3P01860 377 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 PPOXP50336 477 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 SLAQ13239 276 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 TSKUQ8WUA8 353 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 SLC35E1Q96K37 410 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 TUBG2Q9NRH3 451 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 CACNA1GO43497 2377 aa13.37□□□□□ -0.27
SDC4-201ENST00000372733 INTS1Q8N201 2190 aaKnown RBP13.37□□□□□ -0.27
SDC4-201ENST00000372733 ZFHX4Q86UP3 3567 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 TRAV34A0A0B4J273 112 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 KBTBD11-OT1A0A1B0GTJ5 212 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 SRRM4A7MD48 611 aaKnown RBP13.36□□□□□ -0.27
SDC4-201ENST00000372733 HYPMO75409 117 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 CD59P13987 128 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 CHRNB4P30926 498 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 VHLLQ6RSH7 139 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 ITLN1Q8WWA0 313 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 DSCAMO60469 2012 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 ASPMQ8IZT6 3477 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 MMP23AO75900 390 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 APCSP02743 223 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 LINC00614P0C842 121 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 IGLC2P0DOY2 106 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 IGLC3P0DOY3 106 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms