RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TEX22C9J3V5 150 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 INS-IGF2F8WCM5 200 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 NDPQ00604 133 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 EWSR1Q01844 656 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLN3-205ENST00000359984 WT1-ASQ06250 92 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 C16orf82Q7Z2V1 217 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 BSCL2Q96G97 398 aaPredicted RBP15.76■□□□□ 0.11
CLN3-205ENST00000359984 HSPB9Q9BQS6 159 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 SLC25A31Q9H0C2 315 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 GSX1Q9H4S2 264 aaPredicted RBP15.76■□□□□ 0.11
CLN3-205ENST00000359984 ZC4H2Q9NQZ6 224 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 STRAPQ9Y3F4 350 aaKnown RBP15.76■□□□□ 0.11
CLN3-205ENST00000359984 IGLC7A0M8Q6 106 aa15.75■□□□□ 0.11
CLN3-205ENST00000359984 NHLH2Q02577 135 aa15.75■□□□□ 0.11
CLN3-205ENST00000359984 TMEM267Q0VDI3 215 aaPredicted RBP15.75■□□□□ 0.11
CLN3-205ENST00000359984 TMEM14EPQ6UXP3 125 aa15.75■□□□□ 0.11
CLN3-205ENST00000359984 Q71RC1 249 aaPredicted RBP15.75■□□□□ 0.11
CLN3-205ENST00000359984 C15orf62A8K5M9 175 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 CST7O76096 145 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 IFNA10P01566 189 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 METTL15P1P0C7V9 234 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 APELAP0DMC3 54 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 ARPC1AQ92747 370 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 MED9Q9NWA0 146 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 VPREB3Q9UKI3 123 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 HIVEP2P31629 2446 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 M0QZK8 103 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 OR13C7P0DN81 318 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 AREGP15514 252 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 ERHP84090 104 aaKnown RBP15.74■□□□□ 0.11
CLN3-205ENST00000359984 TMEM170AQ8WVE7 144 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 FAM103A1Q9BTL3 118 aaKnown RBP15.74■□□□□ 0.11
CLN3-205ENST00000359984 CYTL1Q9NRR1 136 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 CDC42EP3Q9UKI2 254 aa15.74■□□□□ 0.11
CLN3-205ENST00000359984 RPP30P78346 268 aaKnown RBP15.73■□□□□ 0.11
CLN3-205ENST00000359984 COMMD7Q86VX2 200 aa15.73■□□□□ 0.11
CLN3-205ENST00000359984 SLC24A4Q8NFF2 622 aa15.73■□□□□ 0.11
CLN3-205ENST00000359984 PHYHIPLQ96FC7 376 aa15.73■□□□□ 0.11
CLN3-205ENST00000359984 ZNF471Q9BX82 626 aaPredicted RBP15.73■□□□□ 0.11
CLN3-205ENST00000359984 FBXO7Q9Y3I1 522 aa15.73■□□□□ 0.11
CLN3-205ENST00000359984 REG1AP05451 166 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 EGR2P11161 476 aaPredicted RBP15.72■□□□□ 0.11
CLN3-205ENST00000359984 SULT1A1P50225 295 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 ARL16Q0P5N6 197 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 BSXQ3C1V8 233 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 HAPLN4Q86UW8 402 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 STX12Q86Y82 276 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 STOML3Q8TAV4 291 aa15.72■□□□□ 0.11
CLN3-205ENST00000359984 SRSF8Q9BRL6 282 aaKnown RBP15.72■□□□□ 0.11
CLN3-205ENST00000359984 LINC01548A6NM66 108 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 RNASE2P10153 161 aaKnown RBP15.71■□□□□ 0.11
CLN3-205ENST00000359984 SRD5A1P18405 259 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 NPY1RP25929 384 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 SNCAP37840 140 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 BAXQ07812 192 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 TMEM217Q8N7C4 229 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 ABHD5Q8WTS1 349 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 PMS2P5A8MQ11 134 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 BLCAPP62952 87 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 RBMS3Q6XE24 437 aaKnown RBP15.71■□□□□ 0.11
CLN3-205ENST00000359984 HSD17B13Q7Z5P4 300 aaPredicted RBP15.71■□□□□ 0.11
CLN3-205ENST00000359984 MRPL41Q8IXM3 137 aaKnown RBP15.71■□□□□ 0.11
CLN3-205ENST00000359984 CXorf58Q96LI9 332 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 SMIM3Q9BZL3 60 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 SLC25A32Q9H2D1 315 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 FBXL17Q9UF56 701 aa15.71■□□□□ 0.11
CLN3-205ENST00000359984 SCGB2A2Q13296 93 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 C2orf83Q53S99 150 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 ASPHD1Q5U4P2 390 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 OR8G2PQ6IF36 304 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 DUX5Q96PT3 197 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 P2RX4Q99571 388 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 PARP11Q9NR21 331 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 MTORP42345 2549 aa15.7■□□□□ 0.1
CLN3-205ENST00000359984 INAFM1C9JVW0 142 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 OR8U8P0C7N1 319 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 C9orf152Q5JTZ5 239 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 TMEM86BQ8N661 226 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 WFDC1Q9HC57 220 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 ATP6V0E1O15342 81 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 ATP5IP56385 69 aaPredicted RBP15.69■□□□□ 0.1
CLN3-205ENST00000359984 ETV3LQ6ZN32 361 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 Q6ZS46 218 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 C19orf35Q6ZS72 473 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 LFNGQ8NES3 379 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 OR5C1Q8NGR4 320 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 SGMS2Q8NHU3 365 aa15.69■□□□□ 0.1
CLN3-205ENST00000359984 IFNA4P05014 189 aa15.68■□□□□ 0.1
CLN3-205ENST00000359984 RAB11AP62491 216 aa15.68■□□□□ 0.1
CLN3-205ENST00000359984 STPG2Q8N412 459 aa15.68■□□□□ 0.1
CLN3-205ENST00000359984 ZNF114Q8NC26 417 aa15.68■□□□□ 0.1
CLN3-205ENST00000359984 IGHG2P01859 326 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 SUB1P53999 127 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLN3-205ENST00000359984 CLINT1Q14677 625 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 OR10P1Q8NGE3 313 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 OR1S2Q8NGQ3 325 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 MFSD2BA6NFX1 497 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 DNAJC9-AS1A6NH13 148 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 PRSS46E5RG02 174 aa15.67■□□□□ 0.1
CLN3-205ENST00000359984 TAAR5O14804 337 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms