RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NCOR1O75376 2440 aa13.09□□□□□ -0.31
PTPRF-201ENST00000359947 LINC00312Q9Y6C7 94 aa13.09□□□□□ -0.31
PTPRF-201ENST00000359947 RIF1Q5UIP0 2472 aaKnown RBP13.08□□□□□ -0.31
PTPRF-201ENST00000359947 LOC390937A0A1W2PQ73 354 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 OSR1Q8TAX0 266 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 XIRP1Q702N8 1843 aaKnown RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 YLPM1P49750 1951 aaKnown RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 IQCF6A8MYZ5 107 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 NBEAP1P0C6P0 100 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 CGAP01215 116 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 HLA-DRB1P01911 266 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 C1QTNF5Q9BXJ0 243 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 IFI27L2Q9H2X8 130 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 SRIP30626 198 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 PKIAP61925 76 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 ZFP36L1Q07352 338 aaKnown RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 LEMD1Q68G75 181 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 TMEM238LA0A1B0GVL6 79 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 A6NJY4 79 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 CD7P09564 240 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 TFF3Q07654 80 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 CENPWQ5EE01 88 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 MRPL13Q9BYD1 178 aaKnown RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 SAA2-SAA4A0A096LPE2 208 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 TRGC2P03986 189 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 SAA2P0DJI9 122 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-201ENST00000359947 BRD3OSQ6XYD6 125 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 KIR3DL3Q8N743 410 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 SMIM8Q96KF7 97 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 PARLQ9H300 379 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 CDC42EP3Q9UKI2 254 aa13.08□□□□□ -0.32
PTPRF-201ENST00000359947 GCHFRP30047 84 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 TMEM167AQ8TBQ9 72 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 PPP1R3EQ9H7J1 279 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 ATOH7Q8N100 152 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 LINC00469Q8N7U9 141 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 ALX4Q9H161 411 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-201ENST00000359947 J3QW42 95 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 MRPL32Q9BYC8 188 aaKnown RBP13.07□□□□□ -0.32
PTPRF-201ENST00000359947 NPIPB9F8W1W9 429 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 NPIPB7O75200 414 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 KLRD1Q13241 179 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 LHFPL4Q7Z7J7 247 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 BIVMQ86UB2 503 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 MAPK1IP1LQ8NDC0 245 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 RPRMQ9NS64 109 aa13.07□□□□□ -0.32
PTPRF-201ENST00000359947 TGIF2-C20orf24A0A0A6YYL0 155 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 RIPPLY3P57055 190 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 TMEM14DPA8MWL7 114 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 RHOGP84095 191 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 SDF2L1Q9HCN8 221 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 DOCK10Q96BY6 2186 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 SPATA45Q537H7 98 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 SAA1P0DJI8 122 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-201ENST00000359947 HINT1P49773 126 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-201ENST00000359947 SAPCD1Q5SSQ6 148 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 AICDAQ9GZX7 198 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 TMEM70Q9BUB7 260 aa13.06□□□□□ -0.32
PTPRF-201ENST00000359947 COL5A1-AS1Q5SY13 56 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 ZNF385CQ66K41 422 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-201ENST00000359947 CYB5R2Q6BCY4 276 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 VGLL1Q99990 258 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 C2orf88Q9BSF0 95 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 TMEM133Q9H2Q1 129 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 SOX21Q9Y651 276 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-201ENST00000359947 MEF2CQ06413 473 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-201ENST00000359947 AGAP20933 346 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 FOXA3P55318 350 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-201ENST00000359947 REC114Q7Z4M0 266 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 VMO1Q7Z5L0 202 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 C3orf56Q8N813 242 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 H7C1H1 209 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 IFI6P09912 130 aa13.05□□□□□ -0.32
PTPRF-201ENST00000359947 ZNF672Q499Z4 452 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-201ENST00000359947 TRGV4A0A0C4DH28 118 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 TIMM23O14925 209 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 MYOD1P15172 320 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 PLPPR1Q8TBJ4 325 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 TRAV14DV4A0A0A6YYC5 116 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 PLP1P60201 277 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 FAM166AQ6J272 317 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 ALKBH7Q9BT30 221 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-201ENST00000359947 WNT2P09544 360 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 RPL35AP18077 110 aaKnown RBP13.04□□□□□ -0.32
PTPRF-201ENST00000359947 SBF1O95248 1867 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 SMIM6P0DI80 62 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 OR10AG1Q8NH19 301 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 SFRP2Q96HF1 295 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 LY6HO94772 140 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 HLA-DQA1P01909 254 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 OR5AN1Q8NGI8 311 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 OR52E5Q8NH55 327 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 NPCDR1Q9BY65 106 aa13.04□□□□□ -0.32
PTPRF-201ENST00000359947 RND3P61587 244 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 FAM131CQ96AQ9 280 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 CFAP161Q6P656 301 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 AQP10Q96PS8 301 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 DOCK9Q9BZ29 2069 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 ABCA1O95477 2261 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 FANCMQ8IYD8 2048 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms