RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PITPNC1Q9UKF7 332 aa17.74■□□□□ 0.43
SHMT1-202ENST00000352886 PTPRZ1P23471 2315 aaPredicted RBP17.74■□□□□ 0.43
SHMT1-202ENST00000352886 FABP4P15090 132 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 FAM3BP58499 235 aaPredicted RBP17.73■□□□□ 0.43
SHMT1-202ENST00000352886 OR5B3Q8NH48 314 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 H0YJW9 148 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 LINC00869P0C866 280 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 CD99P14209 185 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 KCNIP4Q6PIL6 250 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 OR10W1Q8NGF6 305 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 OR4P4Q8NGL7 312 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 WFIKKN1Q96NZ8 548 aa17.73■□□□□ 0.43
SHMT1-202ENST00000352886 ACTL6BO94805 426 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 FAM78BQ5VT40 261 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 TMEM144Q7Z5S9 345 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 SPACA3Q8IXA5 215 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 IGKV1OR2-108A0A075B7D4 117 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 NDUFB3O43676 98 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 C2orf83Q53S99 150 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 RNASE6Q93091 150 aaKnown RBP17.72■□□□□ 0.43
SHMT1-202ENST00000352886 ARFGEF3Q5TH69 2177 aa17.72■□□□□ 0.43
SHMT1-202ENST00000352886 CHRNB4P30926 498 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 CDPF1Q6NVV7 123 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 MIR17HGQ75NE6 70 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 OR5AN1Q8NGI8 311 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 OR10X1Q8NGY0 326 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 SLC45A2Q9UMX9 530 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 A0A1B0GV90 55 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 VSTM5A8MXK1 200 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 RNASE2P10153 161 aaKnown RBP17.71■□□□□ 0.43
SHMT1-202ENST00000352886 LRRC10Q5BKY1 277 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 SSX8Q7RTT4 187 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 SSUH2Q9Y2M2 353 aa17.71■□□□□ 0.43
SHMT1-202ENST00000352886 MT-CO2P00403 227 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 FOXC1Q12948 553 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 DIAPH2-AS1Q14236 149 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 GAMTQ14353 236 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 TBR1Q16650 682 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 MLANAQ16655 118 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 SFRP2Q96HF1 295 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 NABP2Q9BQ15 211 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 COMMD5Q9GZQ3 224 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 DYNLRB1Q9NP97 96 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 CTSZQ9UBR2 303 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 DVL1O14640 695 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 TNFRSF13BO14836 293 aaPredicted RBP17.7■□□□□ 0.42
SHMT1-202ENST00000352886 ZNF124Q15973 351 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 OR1L8Q8NGR8 309 aa17.7■□□□□ 0.42
SHMT1-202ENST00000352886 FLYWCH2Q96CP2 140 aaKnown RBP17.7■□□□□ 0.42
SHMT1-202ENST00000352886 SHISA9B4DS77 424 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 TYMSP04818 313 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 HNF1AP20823 631 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 GATA2P23769 480 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-202ENST00000352886 RPL8P62917 257 aaKnown RBP17.69■□□□□ 0.42
SHMT1-202ENST00000352886 TMEM183AQ8IXX5 376 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 FUT9Q9Y231 359 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 POLEQ07864 2286 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 BTF3P20290 206 aaKnown RBP17.69■□□□□ 0.42
SHMT1-202ENST00000352886 OR10J1P30954 320 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 ATP5IP56385 69 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-202ENST00000352886 TMEM177Q53S58 311 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 ACTL10Q5JWF8 245 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 C14orf144Q96I85 54 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 HIST1H2BLQ99880 126 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 NDUFA4L2Q9NRX3 87 aa17.69■□□□□ 0.42
SHMT1-202ENST00000352886 MDFIC2A0A1B0GVS7 189 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 E7EQL1 145 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 IL3RAP26951 378 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 OCC1Q8TAD7 63 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 LCN2P80188 198 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 DMRTC2Q8IXT2 367 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-202ENST00000352886 OR4C13Q8NGP0 309 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 OR9G1Q8NH87 305 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 PACRGQ96M98 296 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-202ENST00000352886 NGBQ9NPG2 151 aa17.68■□□□□ 0.42
SHMT1-202ENST00000352886 XKRY2A2RUG3 117 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 E7EUB6 86 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 LOXP28300 417 aaPredicted RBP17.67■□□□□ 0.42
SHMT1-202ENST00000352886 PSG5Q15238 335 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 ASCL5Q7RTU5 278 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 OR1P1Q8NH06 330 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 TMEM37Q8WXS4 190 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 CD69Q07108 199 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 TMEM186Q96B77 213 aa17.67■□□□□ 0.42
SHMT1-202ENST00000352886 USF1P22415 310 aaPredicted RBP17.66■□□□□ 0.42
SHMT1-202ENST00000352886 ERHP84090 104 aaKnown RBP17.66■□□□□ 0.42
SHMT1-202ENST00000352886 PDPNQ86YL7 162 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 SLC35E1Q96K37 410 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 UHRF2Q96PU4 802 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 IMMP2LQ96T52 175 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 SGMS2Q8NHU3 365 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 C11orf52Q96A22 123 aa17.66■□□□□ 0.42
SHMT1-202ENST00000352886 A0A0U1RQK1 487 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 ZNF320A2RRD8 509 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 FOXL1Q12952 345 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 FAM71F2Q6NXP2 309 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 TEX38Q6PEX7 206 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 LINC00311Q8N616 119 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 ZNF596Q8TC21 504 aa17.65■□□□□ 0.42
SHMT1-202ENST00000352886 VSTM2AQ8TAG5 236 aa17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms