RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FBLN7Q53RD9 439 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 RCC1LQ96I51 464 aaKnown RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 EAF1Q96JC9 268 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 MGST2Q99735 147 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 EIF5A2Q9GZV4 153 aaKnown RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 APELAP0DMC3 54 aa10.71□□□□□ -0.69
HMGB1-202ENST00000339872 SAA4P35542 130 aa10.71□□□□□ -0.69
HMGB1-202ENST00000339872 SSX7Q7RTT5 188 aa10.71□□□□□ -0.69
HMGB1-202ENST00000339872 KIAA1456Q9P272 454 aa10.71□□□□□ -0.69
HMGB1-202ENST00000339872 NAV3Q8IVL0 2385 aa10.71□□□□□ -0.7
HMGB1-202ENST00000339872 BTBD17A6NE02 478 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 HBE1P02100 147 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 APOC3P02656 99 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 CD5P06127 495 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 PAX8Q06710 450 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 CLEC12BQ2HXU8 276 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 TEPPQ6URK8 271 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 LCN15Q6UWW0 184 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 RPP25LQ8N5L8 163 aaKnown RBP10.7□□□□□ -0.7
HMGB1-202ENST00000339872 OR2T10Q8NGZ9 312 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 IGLC7A0M8Q6 106 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 FCN1O00602 326 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 MBP02144 154 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 SUB1P53999 127 aaKnown RBP eCLIP10.7□□□□□ -0.71e-6■■■■■ 36.5
HMGB1-202ENST00000339872 KRTAP10-9P60411 292 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 MRPL41Q8IXM3 137 aaKnown RBP10.7□□□□□ -0.7
HMGB1-202ENST00000339872 OR10G4Q8NGN3 311 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 OR10G9Q8NGN4 311 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 OR10G7Q8NGN6 311 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 MALSU1Q96EH3 234 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 C1orf159Q96HA4 380 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 P2RX4Q99571 388 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 PBDC1Q9BVG4 233 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 GGTLC1Q9BX51 225 aa10.7□□□□□ -0.7
HMGB1-202ENST00000339872 LSM4Q9Y4Z0 139 aaKnown RBP10.7□□□□□ -0.7
HMGB1-202ENST00000339872 FBN2P35556 2912 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 VPS13CQ709C8 3753 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 FNDC10F2Z333 226 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 NPFFO15130 113 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 EIF3GO75821 320 aaKnown RBP eCLIP10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SCO1O75880 301 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 PLA2G2AP14555 144 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 ADCYAP1P18509 176 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 FGF8P55075 233 aaPredicted RBP10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SRSF12Q8WXF0 261 aaKnown RBP10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SCRT1Q9BWW7 348 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SLC25A22Q9H936 323 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 CENPVL3A0A0U1RRI6 287 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 MAP1LC3B2A6NCE7 125 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 C9JQL5 133 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 F8W036 122 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 NDUFA3O95167 84 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SFTA3P0C7M3 94 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 AREGP15514 252 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 OPRK1P41145 380 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SSBP2P81877 361 aaPredicted RBP10.69□□□□□ -0.7
HMGB1-202ENST00000339872 CD69Q07108 199 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 MLANAQ16655 118 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 FAM122CQ6P4D5 195 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 NPBQ8NG41 125 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 SSMEM1Q8WWF3 244 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 MAP1LC3BQ9GZQ8 125 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 PXMP4Q9Y6I8 212 aa10.69□□□□□ -0.7
HMGB1-202ENST00000339872 TRAV1-1A0A0B4J248 108 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 CNIH1O95406 144 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 DEFA4P12838 97 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 SLC25A16P16260 332 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 M6PRP20645 277 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 DEFA5Q01523 94 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 GAMTQ14353 236 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 PEA15Q15121 130 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 ACOT6Q3I5F7 207 aaPredicted RBP10.68□□□□□ -0.7
HMGB1-202ENST00000339872 MIC13Q5XKP0 118 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 SLC16A13Q7RTY0 426 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 PIP4P2Q8N4L2 257 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 MBD3L1Q8WWY6 194 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 AJUBAQ96IF1 538 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 SLC39A9Q9NUM3 307 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 IGHV3OR16-10A0A075B7F0 116 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 TEX22C9J3V5 150 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 J3QKU1 62 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 HMGB3O15347 200 aaKnown RBP10.68□□□□□ -0.7
HMGB1-202ENST00000339872 MSMBP08118 114 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 TMEM11P17152 192 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 PPT1P50897 306 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 RAB31Q13636 194 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 HAGHQ16775 308 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 C19orf35Q6ZS72 473 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 RNASEH2CQ8TDP1 164 aaKnown RBP10.68□□□□□ -0.7
HMGB1-202ENST00000339872 RARRES2Q99969 163 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 KCNIP2Q9NS61 270 aa10.68□□□□□ -0.7
HMGB1-202ENST00000339872 CSMD2Q7Z408 3487 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 TRAV40A0A0B4J280 105 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 CTXND1A0A1B0GTU2 59 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 RBFOX3A6NFN3 312 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 NCBP2LA6PVI3 153 aaKnown RBP10.67□□□□□ -0.7
HMGB1-202ENST00000339872 C5orf64Q2M2E5 130 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 GCSAMLQ5JQS6 135 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 RUSC1-AS1Q66K80 236 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 TMEM144Q7Z5S9 345 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms