RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 RAI1Q7Z5J4 1906 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-201ENST00000316694 TRAV9-1A0A075B6T8 112 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 IGKV1OR2-108A0A075B7D4 117 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 SNURFLB1AK76 121 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 LINC00310P59036 64 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 PQLC2Q6ZP29 291 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 BAGE3Q86Y29 109 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 BAGE2Q86Y30 109 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 DOLPP1Q86YN1 238 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 ZNF439Q8NDP4 499 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 GCM1Q9NP62 436 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 V9GYV3 84 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 OR10J4P0C629 311 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 PRCDQ00LT1 54 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 TIMM23BQ5SRD1 257 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 TOMM20LQ6UXN7 152 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 Q6ZWC4 215 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 RPRMLQ8N4K4 120 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 SNRNP40Q96DI7 357 aaKnown RBP17.97■□□□□ 0.47
SHMT1-201ENST00000316694 TMEM106BQ9NUM4 274 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 LY96Q9Y6Y9 160 aa17.97■□□□□ 0.47
SHMT1-201ENST00000316694 MBD3L4A6NDZ8 208 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 MBD3L3A6NE82 208 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 MBD3L5A6NJ08 208 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 SRRM4A7MD48 611 aaKnown RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 AREGP15514 252 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 MLANAQ16655 118 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 MBD3L2Q8NHZ7 208 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 RND1Q92730 232 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 ATG101Q9BSB4 218 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 SNHG12Q9BXW3 62 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 TMEM167BQ9NRX6 74 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 SLC25A10Q9UBX3 287 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 IL19Q9UHD0 177 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 F2Z2F3 143 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 TNFAIP6P98066 277 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 STUMQ69YW2 141 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 GAFA1Q96PS6 74 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 SFXN3Q9BWM7 321 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 RNASE7Q9H1E1 156 aaKnown RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 SLC35D1Q9NTN3 355 aa17.96■□□□□ 0.47
SHMT1-201ENST00000316694 TECRQ9NZ01 308 aaKnown RBP17.96■□□□□ 0.47
SHMT1-201ENST00000316694 UPK2O00526 184 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 CT45A6P0DMU7 189 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 CT45A5P0DMU8 189 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 CT45A7P0DMV0 189 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 POU2AF1Q16633 256 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 RTL8BQ17RB0 113 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 FAM222BQ8WU58 562 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 HSPB9Q9BQS6 159 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 NCOR1P1Q9H4R4 102 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 KIR2DL5BA0A0G2JN68 375 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 KIR2DL5BA0A0G2JPC4 375 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 FXYD3Q14802 87 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 KIR2DL5AQ8N109 375 aa17.95■□□□□ 0.46
SHMT1-201ENST00000316694 TEX50A0A1B0GTY4 177 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 FNDC10F2Z333 226 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 PAFAH1B2P68402 229 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 SLC35B1P78383 322 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 ST6GALNAC3Q8NDV1 305 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 ZNF503Q96F45 646 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 ZNF257Q9Y2Q1 563 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 IGLV3-9A0A075B6K5 115 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 TCAPO15273 167 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 NUTF2P61970 127 aaKnown RBP17.94■□□□□ 0.46
SHMT1-201ENST00000316694 OR9G1Q8NH87 305 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 SAMD10Q9BYL1 202 aa17.94■□□□□ 0.46
SHMT1-201ENST00000316694 IGHV1-46P01743 117 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 GATA4P43694 442 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 OR10W1Q8NGF6 305 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 DCAF16Q9NXF7 216 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 GGTLC3B5MD39 225 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 TCL1AP56279 114 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 RANP62826 216 aaKnown RBP17.93■□□□□ 0.46
SHMT1-201ENST00000316694 SUMO1P63165 101 aaKnown RBP17.93■□□□□ 0.46
SHMT1-201ENST00000316694 TDRG1Q3Y452 100 aa17.93■□□□□ 0.46
SHMT1-201ENST00000316694 SAA1P0DJI8 122 aaPredicted RBP17.92■□□□□ 0.46
SHMT1-201ENST00000316694 CDKN1AP38936 164 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 SELENOVP59797 346 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 TIGITQ495A1 244 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 NAT8BQ9UHF3 227 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 MAP1BP46821 2468 aaKnown RBP17.92■□□□□ 0.46
SHMT1-201ENST00000316694 M0R143 59 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 SLC25A48Q6ZT89 311 aaKnown RBP17.92■□□□□ 0.46
SHMT1-201ENST00000316694 SLC35E1Q96K37 410 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 RPUSD1Q9UJJ7 312 aaKnown RBP17.92■□□□□ 0.46
SHMT1-201ENST00000316694 ARL2-SNX15V9GYD0 113 aa17.92■□□□□ 0.46
SHMT1-201ENST00000316694 ZNF705AQ6ZN79 300 aaPredicted RBP17.91■□□□□ 0.46
SHMT1-201ENST00000316694 OR5AU1Q8NGC0 362 aa17.91■□□□□ 0.46
SHMT1-201ENST00000316694 CEP250Q9BV73 2442 aa17.91■□□□□ 0.46
SHMT1-201ENST00000316694 MGST1P10620 155 aaKnown RBP17.91■□□□□ 0.46
SHMT1-201ENST00000316694 TAS2R45P59539 299 aa17.91■□□□□ 0.46
SHMT1-201ENST00000316694 GNB1LQ9BYB4 327 aa17.91■□□□□ 0.46
SHMT1-201ENST00000316694 FAM215AQ9Y5M1 114 aa17.91■□□□□ 0.46
SHMT1-201ENST00000316694 DYSFO75923 2080 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 ARFGEF3Q5TH69 2177 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 ESDP10768 282 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 KIAA1644Q3SXP7 199 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 C2orf83Q53S99 150 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 TPTE2P1Q5T6R2 138 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms