RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 ZNF826PQ6ZT77 177 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 COQ2Q96H96 371 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 SFRP2Q96HF1 295 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 QTRT1Q9BXR0 403 aaKnown RBP7.23□□□□□ -1.25
VCL-207ENST00000624354 MRPL18Q9H0U6 180 aaKnown RBP7.23□□□□□ -1.25
VCL-207ENST00000624354 CST9LQ9H4G1 147 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 MRPS16Q9Y3D3 137 aaKnown RBP7.23□□□□□ -1.25
VCL-207ENST00000624354 MED12LQ86YW9 2145 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 SPAARA0A1B0GVQ0 90 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 KITLGP21583 273 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 TSPOP30536 169 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 SSTR5P35346 364 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 LINC00205P59089 165 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 Q8N7P7 452 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 Q8N976 141 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 RFESDQ8TAC1 157 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 DEFB127Q9H1M4 99 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 ACACBO00763 2458 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 PCSK5Q92824 1860 aa7.23□□□□□ -1.25
VCL-207ENST00000624354 DEFB108AA8MXU0 73 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 GPX1P07203 203 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 TPRX1Q8N7U7 411 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 RNF114Q9Y508 228 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 SPENQ96T58 3664 aaKnown RBP7.22□□□□□ -1.25
VCL-207ENST00000624354 PGPEP1LA6NFU8 196 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 C9orf172C9J069 976 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 F2Z2F3 143 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 SPINT2O43291 252 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ZNF253O75346 499 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ZNF90Q03938 601 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 PRAMEF5Q5TYX0 476 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 PRAMEF6Q5VXH4 476 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ACP7Q6ZNF0 438 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ZNF114Q8NC26 417 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 OR13A1Q8NGR1 328 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 KLF14Q8TD94 323 aaPredicted RBP7.22□□□□□ -1.25
VCL-207ENST00000624354 SPRY4Q9C004 299 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 NRN1Q9NPD7 142 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 HEYLQ9NQ87 328 aaPredicted RBP7.22□□□□□ -1.25
VCL-207ENST00000624354 CDC42EP3Q9UKI2 254 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 TBL2Q9Y4P3 447 aaKnown RBP7.22□□□□□ -1.25
VCL-207ENST00000624354 CACNA1BQ00975 2339 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 RBFOX2O43251 390 aaKnown RBP eCLIP7.22□□□□□ -1.25
VCL-207ENST00000624354 OR9G9P0C7N8 305 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ARL14EPLP0DKL9 152 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 MPV17P39210 176 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 OPRK1P41145 380 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 AMTP48728 403 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 Q0VG73 95 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 TMEM164Q5U3C3 297 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 OR4A16Q8NH70 328 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 PRR7Q8TB68 274 aa7.22□□□□□ -1.25
VCL-207ENST00000624354 ZNF891A8MT65 544 aaPredicted RBP7.21□□□□□ -1.25
VCL-207ENST00000624354 C21orf140B9A014 251 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 FCN1O00602 326 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 FCGR3BO75015 233 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 LYZL6O75951 148 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 CXorf1O96002 111 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 ADH4P08319 380 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 STAG3L2P0CL84 134 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 STAG3L3P0CL85 134 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 GPR12P47775 334 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 FOXF2Q12947 444 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 TREML4Q6UXN2 200 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 Q6ZR03 302 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 DEFB124Q8NES8 71 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 OR10G8Q8NGN5 311 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 CXXC4Q9H2H0 198 aa7.21□□□□□ -1.25
VCL-207ENST00000624354 AKAP6Q13023 2319 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 GTF3C1Q12789 2109 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 USF3Q68DE3 2245 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 TRGV5A0A0B4J1U4 118 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 IGHV1-69-2A0A0G2JMI3 117 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 PRSS47A8MTI9 375 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 TNFSF15O95150 251 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 TFF1P04155 84 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 RPS20P60866 119 aaKnown RBP7.21□□□□□ -1.26
VCL-207ENST00000624354 HOXA4Q00056 320 aaPredicted RBP7.21□□□□□ -1.26
VCL-207ENST00000624354 LTC4SQ16873 150 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 C11orf53Q8IXP5 236 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 WNT10AQ9GZT5 417 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 CHODLQ9H9P2 273 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 SPTBN1Q01082 2364 aaKnown RBP7.21□□□□□ -1.26
VCL-207ENST00000624354 TRBV20OR9-2A0A075B6H5 130 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 DPRXA6NFQ7 191 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 K7ERU9 68 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 CD46P15529 392 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 PMCHP20382 165 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 IGHV1-2P23083 117 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 DUTP33316 252 aaKnown RBP7.21□□□□□ -1.26
VCL-207ENST00000624354 ERVK-16P61578 105 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 HLA-DRB5Q30154 266 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 SMIM21Q3B7S5 101 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 MIC13Q5XKP0 118 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 INO80CQ6PI98 192 aaPredicted RBP7.21□□□□□ -1.26
VCL-207ENST00000624354 TRAT1Q6PIZ9 186 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 OR5B3Q8NH48 314 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 ZNF596Q8TC21 504 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 SMIM12Q96EX1 92 aa7.21□□□□□ -1.26
VCL-207ENST00000624354 GMPPAQ96IJ6 420 aaPredicted RBP7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms