RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ERRFI1Q9UJM3 462 aaPredicted RBP8.55□□□□□ -1.04
VPS39-214ENST00000614932 FRYQ5TBA9 3013 aa8.55□□□□□ -1.04
VPS39-214ENST00000614932 hCG_38984A0A1B0GV85 526 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 A0A1W2PPV4 95 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 HLA-DQA1P01909 254 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 ARL16Q0P5N6 197 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 KIR3DS1Q14943 382 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 C8orf86Q6ZUL3 223 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 DOK3Q7L591 496 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 ZNF295-AS1Q8N0V1 137 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 C5orf30Q96GV9 206 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 CYSLTR1Q9Y271 337 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 ARHGAP21Q5T5U3 1957 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 VWC2LB2RUY7 222 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 CA1P00915 261 aaPredicted RBP8.54□□□□□ -1.04
VPS39-214ENST00000614932 GPR12P47775 334 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 HERV-K104P61576 105 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 KIR3DL3Q8N743 410 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 TPRX1Q8N7U7 411 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 OR4C12Q96R67 309 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 ANAPC13Q9BS18 74 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 TMEM204Q9BSN7 226 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 NDFIP1Q9BT67 221 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 PBOV1Q9GZY1 135 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 TMEM191AQ9H0A3 160 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 OR2D2Q9H210 308 aa8.54□□□□□ -1.04
VPS39-214ENST00000614932 CPAMD8Q8IZJ3 1885 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 HELTA6NFD8 242 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 PRR33A8MZF0 331 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 SPINK8P0C7L1 97 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 PSG2P11465 335 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 PLA2G5P39877 138 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 CX3CL1P78423 397 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 ATP5G2Q06055 141 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 TMEM251Q8N6I4 163 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 OR5D13Q8NGL4 314 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 OR10D3Q8NH80 312 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 C10orf35Q96D05 121 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 GRAMD2BQ96HH9 432 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 LHFPL6Q9Y693 200 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 B9A039 149 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 CCL3P10147 92 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 ATP5G3P48201 142 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 PSG7Q13046 419 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 EIF3IQ13347 325 aaKnown RBP8.53□□□□□ -1.04
VPS39-214ENST00000614932 OR8B12Q8NGG6 310 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 OR2T6Q8NHC8 308 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 RAB37Q96AX2 223 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 ZNF391Q9UJN7 358 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 TECTAO75443 2155 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 CLRN1P58418 232 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 PCOLCEQ15113 449 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 ADIPOQQ15848 244 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 MRPL14Q6P1L8 145 aaKnown RBP8.53□□□□□ -1.04
VPS39-214ENST00000614932 TBC1D26Q86UD7 250 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 TTC9CQ8N5M4 171 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 ST8SIA1Q92185 356 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 NAT6Q93015 286 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 KCNK17Q96T54 332 aa8.53□□□□□ -1.04
VPS39-214ENST00000614932 RALYQ9UKM9 306 aaKnown RBP8.53□□□□□ -1.04
VPS39-214ENST00000614932 KNTC1P50748 2209 aa8.52□□□□□ -1.04
VPS39-214ENST00000614932 BDP1A6H8Y1 2624 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 PRRC2CQ9Y520 2896 aaKnown RBP8.52□□□□□ -1.05
VPS39-214ENST00000614932 KBTBD11-OT1A0A1B0GTJ5 212 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 SYS1-DBNDD2H3BUS1 97 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 SPINK4O60575 86 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 APCSP02743 223 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 AMY1AP04745 511 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 COX8AP10176 69 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 PRSS12P56730 875 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 DHRS13Q6UX07 377 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 C1QL2Q7Z5L3 287 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 TMEM105Q8N8V8 129 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 OR51E1Q8TCB6 317 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 CFAP47Q6ZTR5 3102 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 UBE2L5PA0A1B0GUS4 154 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 ANGPTL7O43827 346 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 F2RP25116 425 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 C1orf210Q8IVY1 113 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 B4GALT7Q9UBV7 327 aa8.52□□□□□ -1.05
VPS39-214ENST00000614932 C19orf25Q9UFG5 118 aaPredicted RBP8.52□□□□□ -1.05
VPS39-214ENST00000614932 F8W1H4 67 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 RER1O15258 196 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 NKX2-8O15522 239 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 KLF7O75840 302 aaPredicted RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 COX5AP20674 150 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 DAP3P51398 398 aaKnown RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 RNPS1Q15287 305 aaKnown RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 TRIP6Q15654 476 aaKnown RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 SAMD5Q5TGI4 173 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 UCN2Q96RP3 112 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 PSENENQ9NZ42 101 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 CHCHD2Q9Y6H1 151 aaPredicted RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 ZNF816-ZNF321PA0A0X1KG74 233 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 FOXE3Q13461 319 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 SLC35E4Q6ICL7 350 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 RNASEKQ6P5S7 137 aaKnown RBP8.51□□□□□ -1.05
VPS39-214ENST00000614932 STPG3Q8N7X2 389 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 PIGTQ969N2 578 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 VGLL1Q99990 258 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms