RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 NOTCH1P46531 2555 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 TRBV9A0A0B4J1U6 114 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 OR2J3O76001 311 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 CTRB1P17538 263 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 SLURP1P55000 103 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 DCTN2Q13561 401 aaKnown RBP14.95□□□□□ -0.02
UPF1-212ENST00000601689 RPEL1Q2QD12 228 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 CTRB2Q6GPI1 263 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 OR51S1Q8NGJ8 323 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 LSM10Q969L4 123 aaKnown RBP14.95□□□□□ -0.02
UPF1-212ENST00000601689 RRNAD1Q96FB5 475 aaKnown RBP14.95□□□□□ -0.02
UPF1-212ENST00000601689 OR4C12Q96R67 309 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 PDCD10Q9BUL8 212 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 AKIP1Q9NQ31 210 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 SLC2A8Q9NY64 477 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 FBXL7Q9UJT9 491 aa14.95□□□□□ -0.02
UPF1-212ENST00000601689 TRAV3A0A0B4J244 114 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 PIGBOS1A0A0B4J2F0 54 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 E7EUB6 86 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 PRH1P02810 166 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 HOXD3P31249 432 aaPredicted RBP14.94□□□□□ -0.02
UPF1-212ENST00000601689 EXOSC2Q13868 293 aaKnown RBP14.94□□□□□ -0.02
UPF1-212ENST00000601689 C15orf32Q32M92 178 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 SGPP2Q8IWX5 399 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 OR1L6Q8NGR2 347 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 MRAPQ8TCY5 172 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 DLX4Q92988 240 aaPredicted RBP14.94□□□□□ -0.02
UPF1-212ENST00000601689 MRGPRFQ96AM1 343 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 EEF1AKMT3Q96AZ1 226 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 CXorf58Q96LI9 332 aa14.94□□□□□ -0.02
UPF1-212ENST00000601689 TEX50A0A1B0GTY4 177 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 SAP30O75446 220 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 AREGP15514 252 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 ETV6P41212 452 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 DHODHQ02127 395 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 EGFEM1PQ0D2K5 195 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 CCDC190Q86UF4 302 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 GDPD1Q8N9F7 314 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 SEC22AQ96IW7 307 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 AURKAIP1Q9NWT8 199 aaPredicted RBP14.93□□□□□ -0.02
UPF1-212ENST00000601689 NSG2Q9Y328 171 aa14.93□□□□□ -0.02
UPF1-212ENST00000601689 C15orf61A6NNL5 157 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 WIPF1O43516 503 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 REG1AP05451 166 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 OR13C7P0DN81 318 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 MYOD1P15172 320 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 ZNF57Q68EA5 555 aaPredicted RBP14.92□□□□□ -0.02
UPF1-212ENST00000601689 OR6Q1Q8NGQ2 317 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 TP53RKQ96S44 253 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 GPR132Q9UNW8 380 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 V9GYH0 126 aa14.92□□□□□ -0.02
UPF1-212ENST00000601689 PRB2P02812 416 aaPredicted RBP14.91□□□□□ -0.02
UPF1-212ENST00000601689 ANXA3P12429 323 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 UCP1P25874 307 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 ERHP84090 104 aaKnown RBP14.91□□□□□ -0.02
UPF1-212ENST00000601689 DEFA5Q01523 94 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 ZNF45Q02386 682 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 TRIQKQ629K1 86 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 SLC25A24Q6NUK1 477 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 NAA60Q9H7X0 242 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 NDUFA4L2Q9NRX3 87 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 TMEM14BQ9NUH8 114 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 PEMTQ9UBM1 199 aa14.91□□□□□ -0.02
UPF1-212ENST00000601689 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.9□□□□□ -0.02
UPF1-212ENST00000601689 TRBV7-1A0A0A6YYK4 115 aa14.9□□□□□ -0.02
UPF1-212ENST00000601689 IGLC7A0M8Q6 106 aa14.9□□□□□ -0.02
UPF1-212ENST00000601689 SP6Q3SY56 376 aa14.9□□□□□ -0.02
UPF1-212ENST00000601689 FAM219AQ8IW50 185 aa14.9□□□□□ -0.02
UPF1-212ENST00000601689 RTBDNQ9BSG5 229 aaPredicted RBP14.9□□□□□ -0.02
UPF1-212ENST00000601689 C5orf66Q9H5L9 145 aa14.9□□□□□ -0.02
UPF1-212ENST00000601689 CENPXA8MT69 81 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 IFNA17P01571 189 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 OR5AC1P0C628 307 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 HSPE1P61604 102 aaKnown RBP14.89□□□□□ -0.03
UPF1-212ENST00000601689 ZNF79Q15937 498 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 DEFB121Q5J5C9 76 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 ACSM6Q6P461 480 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 OR10W1Q8NGF6 305 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 SLC25A21Q9BQT8 299 aaPredicted RBP14.89□□□□□ -0.03
UPF1-212ENST00000601689 TMEM222Q9H0R3 208 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 PLEKHA3Q9HB20 300 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 ENY2Q9NPA8 101 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 CACFD1Q9UGQ2 172 aa14.89□□□□□ -0.03
UPF1-212ENST00000601689 IGLV11-55A0A075B6I3 123 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 A0A1B0GW64 132 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 CRYM-AS1A6NIL9 109 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 CGB1A6NKQ9 187 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 GGCTO75223 188 aaKnown RBP14.88□□□□□ -0.03
UPF1-212ENST00000601689 IGKV1-39P01597 117 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 IGKV1D-39P04432 117 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 KLF9Q13886 244 aaPredicted RBP14.88□□□□□ -0.03
UPF1-212ENST00000601689 RBPMSQ93062 196 aaKnown RBP14.88□□□□□ -0.03
UPF1-212ENST00000601689 FANCD2OSQ96PS1 177 aa14.88□□□□□ -0.03
UPF1-212ENST00000601689 NDUFB8O95169 186 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 CDS2O95674 445 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 LY86O95711 162 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 AKR1C4P17516 323 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 SYNJ2BPP57105 145 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 SRPXP78539 464 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 PRCDQ00LT1 54 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms