RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SIX6O95475 246 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 MPC2O95563 127 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 MBPP02686 304 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 LYL1P12980 280 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 SSBP2P81877 361 aaPredicted RBP12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 ERHP84090 104 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 IZUMO4Q1ZYL8 232 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 AKIRIN2Q53H80 203 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 SLC35E3Q7Z769 313 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 OR2T35Q8NGX2 323 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 SMIM8Q96KF7 97 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 NSG2Q9Y328 171 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 U3KQ87 197 aa12.68□□□□□ -0.38
PRPF40A-212ENST00000545856 JMJD1CQ15652 2540 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 C2CD3Q4AC94 2353 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 CEBPZOSA8MTT3 80 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 K7EPK0 472 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 FCN1O00602 326 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 DEDDO75618 318 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 CRYBA1P05813 215 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 HTR2BP41595 481 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 HOXA1P49639 335 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 SUB1P53999 127 aaKnown RBP eCLIP12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 PJVKQ0ZLH3 352 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 RAB32Q13637 225 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 CXorf66Q5JRM2 361 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 PRSS54Q6PEW0 395 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 THAP6Q8TBB0 222 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 ESM1Q9NQ30 184 aa12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 RCL1Q9Y2P8 373 aaKnown RBP12.67□□□□□ -0.38
PRPF40A-212ENST00000545856 NPIPB5A8MRT5 1133 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 H3BUA1 57 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 NDUFA7O95182 113 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 SLC25A4P12235 298 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 VDAC2P45880 294 aaPredicted RBP12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 RPL23AP62750 156 aaKnown RBP12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 GNB1P62873 340 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 CD83Q01151 205 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 PPP1R14BQ96C90 147 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 ST6GAL2Q96JF0 529 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 RBKSQ9H477 322 aa12.66□□□□□ -0.38
PRPF40A-212ENST00000545856 SETD2Q9BYW2 2564 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 IGLC7A0M8Q6 106 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 TMEM89A2RUT3 159 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 TEX22C9J3V5 150 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 L7N2F9 121 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 CORTO00230 105 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 SCGB1D2O95969 90 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 CRYGCP07315 174 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 P2RY1P47900 373 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 S100A10P60903 97 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 VAMP2P63027 116 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 KLK9Q2XQG4 91 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 BSXQ3C1V8 233 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 C11orf87Q6NUJ2 197 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 OR2C3Q8N628 320 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 HSPB9Q9BQS6 159 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 HEYLQ9NQ87 328 aaPredicted RBP12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 KLK9Q9UKQ9 250 aa12.65□□□□□ -0.38
PRPF40A-212ENST00000545856 FAM181BA6NEQ2 426 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 PFDN1O60925 122 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 SNCAP37840 140 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 POLR2GP62487 172 aaKnown RBP eCLIP12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 NDPQ00604 133 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 TMEM65Q6PI78 240 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 TTC9CQ8N5M4 171 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 OR1P1Q8NH06 330 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 OR2T6Q8NHC8 308 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 GRPEL2Q8TAA5 225 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 NEURL2Q9BR09 285 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 C16orf95Q9H693 158 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 RANGRFQ9HD47 186 aaPredicted RBP12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 PARP11Q9NR21 331 aa12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 LYRM2Q9NU23 88 aaPredicted RBP12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 LSM5Q9Y4Y9 91 aaKnown RBP12.64□□□□□ -0.39
PRPF40A-212ENST00000545856 A0A1B0GUS0 222 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 MSGN1A6NI15 193 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 CGB1A6NKQ9 187 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 HMSDA8MTL9 139 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 ATP6V0E1O15342 81 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 SSSCA1O60232 199 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 C1QBP02746 253 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 HIST1H1BP16401 226 aaKnown RBP12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 BLCAPP62952 87 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 BAXQ07812 192 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 C2orf83Q53S99 150 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 C10orf55Q5SWW7 151 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 COMMD1Q8N668 190 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 SLC24A4Q8NFF2 622 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 FAM110DQ8TAY7 271 aaPredicted RBP12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 ABHD5Q8WTS1 349 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 HINT2Q9BX68 163 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 SLC25A31Q9H0C2 315 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 C11orf1Q9H5F2 150 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 ZNF702PQ9H963 129 aa12.63□□□□□ -0.39
PRPF40A-212ENST00000545856 TRAV41A0A0B4J266 112 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 OR13C7P0DN81 318 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 CTRB1P17538 263 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 NUP62P37198 522 aaPredicted RBP12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 RAB11AP62491 216 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms