RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 C15orf62A8K5M9 175 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 SCAF4O95104 1147 aaKnown RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 EXOSC2Q13868 293 aaKnown RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 C10orf55Q5SWW7 151 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 BAP18Q8IXM2 172 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 STPG2Q8N412 459 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 NANPQ8TBE9 248 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 ASH1LQ9NR48 2969 aaKnown RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 INS-IGF2F8WCM5 200 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 FCN1O00602 326 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 DFFBO76075 338 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 FBP1P09467 338 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 RPL27AP46776 148 aaKnown RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 COMPP49747 757 aaPredicted RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 GNB1P62873 340 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 ERHP84090 104 aaKnown RBP16.78■□□□□ 0.28
VPS28-208ENST00000527797 ZNF266Q14584 549 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 C5orf64Q2M2E5 130 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 OR8G2PQ6IF36 304 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 HAPLN4Q86UW8 402 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 SLC24A4Q8NFF2 622 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 OR10P1Q8NGE3 313 aa16.78■□□□□ 0.28
VPS28-208ENST00000527797 E7EUB6 86 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 OR8U8P0C7N1 319 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 ARL16Q0P5N6 197 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 UBAC2Q8NBM4 344 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 OR10W1Q8NGF6 305 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 ATP5SQ99766 215 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 UBQLN2Q9UHD9 624 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 SOX21Q9Y651 276 aaPredicted RBP16.77■□□□□ 0.27
VPS28-208ENST00000527797 CR1P17927 2039 aa16.77■□□□□ 0.27
VPS28-208ENST00000527797 FASNP49327 2511 aaKnown RBP16.76■□□□□ 0.27
VPS28-208ENST00000527797 PRRC2AP48634 2157 aaKnown RBP16.76■□□□□ 0.27
VPS28-208ENST00000527797 CGB1A6NKQ9 187 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 PMS2P5A8MQ11 134 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 CA2P00918 260 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 HTR2BP41595 481 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 ATP5IP56385 69 aaPredicted RBP16.76■□□□□ 0.27
VPS28-208ENST00000527797 RAB11AP62491 216 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 MRPL41Q8IXM3 137 aaKnown RBP16.76■□□□□ 0.27
VPS28-208ENST00000527797 LILRB2Q8N423 598 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 PINX1Q96BK5 328 aaKnown RBP16.76■□□□□ 0.27
VPS28-208ENST00000527797 PHYHIPLQ96FC7 376 aa16.76■□□□□ 0.27
VPS28-208ENST00000527797 NPY1RP25929 384 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 SNCAP37840 140 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 SLC38A11Q08AI6 406 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 LRRC75BQ2VPJ9 315 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 ALKAL2Q6UX46 152 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 SSX3Q99909 188 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 UNC79Q9P2D8 2635 aa16.75■□□□□ 0.27
VPS28-208ENST00000527797 A0A1B0GW64 132 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 CNIH1O95406 144 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 FSHBP01225 129 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 ATP6V1FQ16864 119 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 ETV3LQ6ZN32 361 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 CSMD2Q7Z408 3487 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 IFNA5P01569 189 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 IFNA4P05014 189 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 Q8N9W7 124 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 PIFOQ8TCI5 191 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 SCARB1Q8WTV0 552 aa16.74■□□□□ 0.27
VPS28-208ENST00000527797 SRSF12Q8WXF0 261 aaKnown RBP16.74■□□□□ 0.27
VPS28-208ENST00000527797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.73■□□□□ 0.273e-7■■■■□ 19.9
VPS28-208ENST00000527797 OR13C7P0DN81 318 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 WT1-ASQ06250 92 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 AANATQ16613 207 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 C2orf83Q53S99 150 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 TMEM170AQ8WVE7 144 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 RASL11BQ9BPW5 248 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 ARV1Q9H2C2 271 aa16.73■□□□□ 0.27
VPS28-208ENST00000527797 SUB1P53999 127 aaKnown RBP eCLIP16.72■□□□□ 0.27
VPS28-208ENST00000527797 SSBP2P81877 361 aaPredicted RBP16.72■□□□□ 0.27
VPS28-208ENST00000527797 FXYD3Q14802 87 aa16.72■□□□□ 0.27
VPS28-208ENST00000527797 BSXQ3C1V8 233 aa16.72■□□□□ 0.27
VPS28-208ENST00000527797 EIF5AL1Q6IS14 154 aaKnown RBP16.72■□□□□ 0.27
VPS28-208ENST00000527797 ZNF562Q6V9R5 426 aa16.72■□□□□ 0.27
VPS28-208ENST00000527797 HSD17B13Q7Z5P4 300 aaPredicted RBP16.72■□□□□ 0.27
VPS28-208ENST00000527797 GINS3Q9BRX5 216 aa16.72■□□□□ 0.27
VPS28-208ENST00000527797 PDZD2O15018 2839 aa16.71■□□□□ 0.27
VPS28-208ENST00000527797 TET2Q6N021 2002 aaPredicted RBP16.71■□□□□ 0.27
VPS28-208ENST00000527797 RNASE2P10153 161 aaKnown RBP16.71■□□□□ 0.27
VPS28-208ENST00000527797 SLC25A24Q6NUK1 477 aa16.71■□□□□ 0.27
VPS28-208ENST00000527797 TEX29Q8N6K0 151 aa16.71■□□□□ 0.27
VPS28-208ENST00000527797 RBM14Q96PK6 669 aaKnown RBP16.71■□□□□ 0.27
VPS28-208ENST00000527797 SRSF8Q9BRL6 282 aaKnown RBP16.71■□□□□ 0.27
VPS28-208ENST00000527797 TMEM147Q9BVK8 224 aa16.71■□□□□ 0.27
VPS28-208ENST00000527797 IGLC7A0M8Q6 106 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 H3BUX3 64 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 CX3CL1P78423 397 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 C9orf139Q6ZV77 190 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 HSD17B11Q8NBQ5 300 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 SLC25A33Q9BSK2 321 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 TEX22C9J3V5 150 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 TUSC1Q2TAM9 212 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 DEFB112Q30KQ8 113 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 BCL6BQ8N143 479 aaPredicted RBP16.7■□□□□ 0.26
VPS28-208ENST00000527797 SCGB1C1Q8TD33 95 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 TMED6Q8WW62 240 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 GGACTQ9BVM4 153 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 UQCC1Q9NVA1 299 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms