RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FGFR1OP2Q9NVK5 253 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 USE1Q9NZ43 259 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 C3orf18Q9UK00 162 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 FUT9Q9Y231 359 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 ATP6V1DQ9Y5K8 247 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 HEATR5BQ9P2D3 2071 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 KIF24Q5T7B8 1368 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 GGT3PA6NGU5 568 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 SMIM23A6NLE4 172 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 CXCR6O00574 342 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 E2F6O75461 281 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 IGHV3-7P01780 117 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 KCNE1P15382 129 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 CLVS2Q5SYC1 327 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 LRRN1Q6UXK5 716 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 FAM151BQ6UXP7 276 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 DHFR2Q86XF0 187 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 TMEM156Q8N614 296 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 C9orf163Q8N9P6 203 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 C15orf53Q8NAA6 179 aa0.82□□□□□ -2.28
VPS50-219ENST00000495039 EIF4G1Q04637 1599 aaKnown RBP0.82□□□□□ -2.28
VPS50-219ENST00000495039 DLG5Q8TDM6 1919 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 SETD5Q9C0A6 1442 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 MAST2Q6P0Q8 1798 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 STRCQ7RTU9 1775 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 H0Y980 276 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 DEXIO95424 95 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 C1QAP02745 245 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 METTL15P1P0C7V9 234 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 UBBP0CG47 229 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 FGF6P10767 208 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 MAGEA2P43356 314 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 EIF2B2P49770 351 aaKnown RBP0.81□□□□□ -2.28
VPS50-219ENST00000495039 FXYD2P54710 66 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 MAGOHP61326 146 aaKnown RBP0.81□□□□□ -2.28
VPS50-219ENST00000495039 COQ5Q5HYK3 327 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 CCDC122Q5T0U0 273 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 GLT8D1Q68CQ7 371 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 DEFB125Q8N687 156 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 LLPHQ9BRT6 129 aaKnown RBP0.81□□□□□ -2.28
VPS50-219ENST00000495039 YIPF3Q9GZM5 350 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 PARVGQ9HBI0 331 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 IL36BQ9NZH7 164 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 NOSIPQ9Y314 301 aaKnown RBP0.81□□□□□ -2.28
VPS50-219ENST00000495039 LHFPL6Q9Y693 200 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 INTS1Q8N201 2190 aaKnown RBP0.81□□□□□ -2.28
VPS50-219ENST00000495039 TONSLQ96HA7 1378 aa0.81□□□□□ -2.28
VPS50-219ENST00000495039 BAZ2BQ9UIF8 2168 aaKnown RBP0.8□□□□□ -2.28
VPS50-219ENST00000495039 IRGMA1A4Y4 181 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 C21orf140B9A014 251 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 LRRN3E7EW58 273 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 SLC16A4O15374 487 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 HCRTO43612 131 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 NIPSNAP2O75323 286 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 PMP2P02689 132 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 FAM228BP0C875 321 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 RPS12P25398 132 aaKnown RBP0.8□□□□□ -2.28
VPS50-219ENST00000495039 MARCKSL1P49006 195 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 NAA20P61599 178 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 RPL18Q07020 188 aaKnown RBP0.8□□□□□ -2.28
VPS50-219ENST00000495039 C10orf55Q5SWW7 151 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 LPCAT4Q643R3 524 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 PTRHD1Q6GMV3 140 aaKnown RBP0.8□□□□□ -2.28
VPS50-219ENST00000495039 CNBD2Q96M20 576 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 REG4Q9BYZ8 158 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 UBAP1Q9NZ09 502 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 BAIAP2Q9UQB8 552 aa0.8□□□□□ -2.28
VPS50-219ENST00000495039 A0A1B0GV50 99 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 TMEM212A6NML5 194 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 EVPLLA8MZ36 301 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 GOLGA6L19H0YKK7 550 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 AHSA1O95433 338 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 S100A6P06703 90 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 RPS4Y1P22090 263 aaKnown RBP0.79□□□□□ -2.28
VPS50-219ENST00000495039 CEBPGP53567 150 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 AP2S1P53680 142 aaPredicted RBP0.79□□□□□ -2.28
VPS50-219ENST00000495039 SUPT4H1P63272 117 aaKnown RBP0.79□□□□□ -2.28
VPS50-219ENST00000495039 UBE2IP63279 158 aaKnown RBP0.79□□□□□ -2.28
VPS50-219ENST00000495039 ZNF345Q14585 488 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 CDK10Q15131 360 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 GID4Q8IVV7 300 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 GPR32P1Q8NGA4 272 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 RAB8BQ92930 207 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 ODF3Q96PU9 254 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 SERPINI1Q99574 410 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 MRPS26Q9BYN8 205 aaKnown RBP0.79□□□□□ -2.28
VPS50-219ENST00000495039 EFCAB1Q9HAE3 211 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 SNURFQ9Y675 71 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 RALGAPA2Q2PPJ7 1873 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 DCCP43146 1447 aa0.79□□□□□ -2.28
VPS50-219ENST00000495039 CCDC88AQ3V6T2 1871 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 HEATR5AQ86XA9 2040 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 FABP5P3A8MUU1 101 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 M0R036 132 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 PRM2P04554 102 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 RUNX1Q01196 453 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 GRK1Q15835 563 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 DEFB115Q30KQ5 88 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 SYPL2Q5VXT5 272 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 AAED1Q7RTV5 226 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms