RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 C1QCP02747 245 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 EIF4EP06730 217 aaKnown RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 SERPINE2P07093 398 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 CST2P09228 141 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 FAM228BP0C875 321 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 RRM2P31350 389 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 PRRX1P54821 245 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 RCN1Q15293 331 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 HLA-DRB5Q30154 266 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 C10orf128Q5T292 105 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 METTL21CQ5VZV1 264 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 Q5W150 140 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 MORN3Q6PF18 240 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 CD200R1LQ6Q8B3 271 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 SLC35D2Q76EJ3 337 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 APRG1Q8IVJ8 170 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 OFCC1Q8IZS5 231 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 C4orf33Q8N1A6 199 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 TCTEX1D1Q8N7M0 179 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 NOXO1Q8NFA2 376 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 OR1M1Q8NGA1 313 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 OR5D16Q8NGK9 328 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 APOBEC3DQ96AK3 386 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF714Q96N38 554 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 GEMIN7Q9H840 131 aaKnown RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 LZTFL1Q9NQ48 299 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 TMED5Q9Y3A6 229 aa2.21□□□□□ -2.06
VPS13A-210ENST00000471439 NOP16Q9Y3C1 178 aaKnown RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 FLGP20930 4061 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-210ENST00000471439 A0A096LPI6 279 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 IGHV3-72A0A0B4J1Y9 119 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 SPRR5A0A1B0GTR4 108 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 LRCOL1A6NCL2 159 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF705GA8MUZ8 300 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 H0YJW9 148 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 SMKR1H3BMG3 65 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 SPOPO43791 374 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 OR2T1O43869 369 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 WISP3O95389 354 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 CRYGCP07315 174 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 BGNP21810 368 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 BLVRBP30043 206 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 PCBD1P61457 104 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 CIRBPQ14011 172 aaKnown RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 ENDOGQ14249 297 aaKnown RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 GPR107Q5VW38 600 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 FAM71E1Q6IPT2 247 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 FAM122BQ7Z309 247 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 Q8N814 137 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 LYPD6BQ8NI32 183 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 RBPMSQ93062 196 aaKnown RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 MRGPRFQ96AM1 343 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 RPEQ96AT9 228 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 EEF1AKMT3Q96AZ1 226 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 SPACA5Q96QH8 159 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 OR7D2Q96RA2 312 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 CHP1Q99653 195 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 MICU1Q9BPX6 476 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 NDFIP1Q9BT67 221 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 DERL2Q9GZP9 239 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 C6orf62Q9GZU0 229 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 PARP12Q9H0J9 701 aaKnown RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF286AQ9HBT8 521 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 LINC00846Q9NV44 126 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 MTCH1Q9NZJ7 389 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 VPS29Q9UBQ0 182 aa2.2□□□□□ -2.06
VPS13A-210ENST00000471439 PEF1Q9UBV8 284 aaKnown RBP2.2□□□□□ -2.06
VPS13A-210ENST00000471439 IGKV2-28A0A075B6P5 120 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 A0A075B6Q4 140 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CD300LBA8K4G0 201 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 PLPP3O14495 311 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 SGCEO43556 437 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF207O43670 478 aaKnown RBP2.19□□□□□ -2.06
VPS13A-210ENST00000471439 ADAP1O75689 374 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 IGKV2D-28P01615 120 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 TRGV3P03979 118 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 MRPL3P09001 348 aaKnown RBP2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CD3GP09693 182 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 SPART-AS1P0CW21 52 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CRYGAP11844 174 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 RAB3BP20337 219 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CBLN1P23435 193 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 FMODQ06828 376 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 KRTAP19-2Q3LHN2 52 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 KRTAP19-6Q3LI70 58 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 SPANXN2Q5MJ10 180 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CBLN2Q8IUK8 224 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 OR1L1Q8NH94 360 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 FAM81AQ8TBF8 368 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 UPK3BQ9BT76 320 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 TSGA10Q9BZW7 698 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 TLNRD1Q9H1K6 362 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CYTL1Q9NRR1 136 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 CCDC59Q9P031 241 aaKnown RBP2.19□□□□□ -2.06
VPS13A-210ENST00000471439 AP3M1Q9Y2T2 418 aa2.19□□□□□ -2.06
VPS13A-210ENST00000471439 TRAPPC13A5PLN9 417 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 OR6C6A6NF89 314 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 RFPL4AA6NLU0 287 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 LYRM9A8MSI8 78 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 SUPT3HB4E1H0 165 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms