RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CDX1P47902 265 aaPredicted RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 CAMPP49913 170 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 PAX9P55771 341 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 RPL8P62917 257 aaKnown RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 SPSB3Q6PJ21 355 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 IL19Q9UHD0 177 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 KBTBD11-OT1A0A1B0GTJ5 212 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 SRRM5B3KS81 715 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 RRHO14718 337 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 REG1AP05451 166 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 PRRX1P54821 245 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 TOMM20LQ6UXN7 152 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 STPG3Q8N7X2 389 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 LPAR2Q9HBW0 351 aa9.68□□□□□ -0.86
NPHP4-204ENST00000460696 DSPP15924 2871 aaKnown RBP9.68□□□□□ -0.86
NPHP4-204ENST00000460696 IGKV1-39P01597 117 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 IGKV1D-39P04432 117 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 CRISP2P16562 243 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 UQCRFS1P47985 274 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 RANP62826 216 aaKnown RBP9.67□□□□□ -0.86
NPHP4-204ENST00000460696 CYP2G1PQ6ZSU1 146 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 RPRMLQ8N4K4 120 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 TIMM9Q9Y5J7 89 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 CXCL1P09341 107 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 LINC00869P0C866 280 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 TMEM11P17152 192 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 CRIP3Q6Q6R5 217 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 TNCP24821 2201 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 SAA2-SAA4A0A096LPE2 208 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 PGPEP1LA6NFU8 196 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 ZNF729A6NN14 1252 aaPredicted RBP9.67□□□□□ -0.86
NPHP4-204ENST00000460696 SNURFLB1AK76 121 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 SAA2P0DJI9 122 aaPredicted RBP9.67□□□□□ -0.86
NPHP4-204ENST00000460696 AGAP20933 346 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 LYZP61626 148 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 ELOBQ15370 118 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 PLA2G2EQ9NZK7 142 aa9.67□□□□□ -0.86
NPHP4-204ENST00000460696 IGKV3-15P01624 115 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 IGFBP2P18065 325 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 CRYBB3P26998 211 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 RPEL1Q2QD12 228 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 MBNL3Q9NUK0 354 aaKnown RBP9.66□□□□□ -0.86
NPHP4-204ENST00000460696 YPEL1O60688 119 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 IGHG3P01860 377 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 ERVFRD-1P60508 538 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 BSPH1Q075Z2 132 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 Q6ZSR3 168 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 YPEL2Q96QA6 119 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 NABP2Q9BQ15 211 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 ZNF586Q9NXT0 402 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 COA4Q9NYJ1 87 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 GATCO43716 136 aaKnown RBP9.66□□□□□ -0.86
NPHP4-204ENST00000460696 IL6RP08887 468 aaPredicted RBP9.66□□□□□ -0.86
NPHP4-204ENST00000460696 RPL23P62829 140 aaKnown RBP9.66□□□□□ -0.86
NPHP4-204ENST00000460696 HEPN1Q6WQI6 88 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 Q6ZR03 302 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 SGK494Q96LW2 274 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 GGACTQ9BVM4 153 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 SLC25A15Q9Y619 301 aa9.66□□□□□ -0.86
NPHP4-204ENST00000460696 TRAV3A0A0B4J244 114 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 C10orf113Q5VZT2 155 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 TMEM14EPQ6UXP3 125 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 NHLRC2Q8NBF2 726 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 OR1L4Q8NGR5 311 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 MBD3L1Q8WWY6 194 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 RNF115Q9Y4L5 304 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 A0A087X0M5 115 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 A0A1B0GX30 115 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 HSBP1O75506 76 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 IQCJQ1A5X6 159 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 OR5AU1Q8NGC0 362 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 TXN2Q99757 166 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 SEBOXQ9HB31 216 aaPredicted RBP9.65□□□□□ -0.86
NPHP4-204ENST00000460696 J3QKU1 62 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 WISP2O76076 250 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 GCHFRP30047 84 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 RND2P52198 227 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 TPPP2P59282 170 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 FXYD3Q14802 87 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 PQLC2Q6ZP29 291 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 FAM90A1Q86YD7 464 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 PDPNQ86YL7 162 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 OR1L6Q8NGR2 347 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 NPIPB3Q92617 1050 aa9.65□□□□□ -0.86
NPHP4-204ENST00000460696 IGKV1D-17A0A075B6S4 117 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 A0A087WWC5 75 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 CHEK1O14757 476 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 ZNF253O75346 499 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 CGAP01215 116 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 PAX5Q02548 391 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 ETFRF1Q6IPR1 90 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 ZNF474Q6S9Z5 364 aaPredicted RBP9.65□□□□□ -0.87
NPHP4-204ENST00000460696 FAM57AQ8TBR7 257 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 GNB4Q9HAV0 340 aa9.65□□□□□ -0.87
NPHP4-204ENST00000460696 CELSR3Q9NYQ7 3312 aa9.64□□□□□ -0.87
NPHP4-204ENST00000460696 DNAH14Q0VDD8 3507 aa9.64□□□□□ -0.87
NPHP4-204ENST00000460696 SCO2A0A1W2PP80 73 aa9.64□□□□□ -0.87
NPHP4-204ENST00000460696 K7EQM0 130 aa9.64□□□□□ -0.87
NPHP4-204ENST00000460696 SLC31A2O15432 143 aa9.64□□□□□ -0.87
NPHP4-204ENST00000460696 IGHV1-46P01743 117 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms