RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 NDUFB4O95168 129 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 APCSP02743 223 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 GCHFRP30047 84 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 HERVK_113P61574 105 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 ID3Q02535 119 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 IGKV1-12A0A0C4DH73 117 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 TGFAP01135 160 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 IGKV1D-12P01611 117 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 IL6RP08887 468 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-205ENST00000414879 TUSC1Q2TAM9 212 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 CLDND2Q8NHS1 167 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 GVINP1Q7Z2Y8 2422 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 IGHV3-21A0A0B4J1V1 117 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 MYOD1P15172 320 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 PRCDQ00LT1 54 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 FAM201AQ5SY85 155 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 SGMS2Q8NHU3 365 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 FBXL7Q9UJT9 491 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 SCO1O75880 301 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 ELOBQ15370 118 aa9.98□□□□□ -0.81
PTPRF-205ENST00000414879 FOXG1P55316 489 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-205ENST00000414879 OR11H4Q8NGC9 324 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 ARL14EPLP0DKL9 152 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 LY6EQ16553 131 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 DDB2Q92466 427 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 TBL2Q9Y4P3 447 aaKnown RBP9.97□□□□□ -0.81
PTPRF-205ENST00000414879 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.97□□□□□ -0.81
PTPRF-205ENST00000414879 IL4P05112 153 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 BTCP35070 178 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 CDKN1AP38936 164 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 ZNF474Q6S9Z5 364 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-205ENST00000414879 PRSS33Q8NF86 280 aa9.97□□□□□ -0.81
PTPRF-205ENST00000414879 SNURFLB1AK76 121 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 B4DSR2 109 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 OR2J3O76001 311 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 OR5AL1P0C617 328 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 SAA1P0DJI8 122 aaPredicted RBP9.96□□□□□ -0.81
PTPRF-205ENST00000414879 GATA3P23771 443 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 GATA4P43694 442 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 NHLH1Q02575 133 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 TMEM97Q5BJF2 176 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 LRP11Q86VZ4 500 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 TMEM116Q8NCL8 245 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 PROK2Q9HC23 129 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 A0A0A6YYD4 124 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 PROB1E7EW31 1015 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 VKORC1L1Q8N0U8 176 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 MAP1LC3CQ9BXW4 147 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 NOTCH4Q99466 2003 aa9.96□□□□□ -0.81
PTPRF-205ENST00000414879 TRGC1P0CF51 173 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 WDR25Q64LD2 544 aaPredicted RBP9.96□□□□□ -0.82
PTPRF-205ENST00000414879 Q8TCH9 128 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 RNF138Q8WVD3 245 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 PEMTQ9UBM1 199 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 TRAV9-1A0A075B6T8 112 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 E9PQ18 207 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 CCL3L1P16619 93 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 RPL29P47914 159 aaKnown RBP9.96□□□□□ -0.82
PTPRF-205ENST00000414879 NUTF2P61970 127 aaKnown RBP9.96□□□□□ -0.82
PTPRF-205ENST00000414879 IGFL2Q6UWQ7 119 aa9.96□□□□□ -0.82
PTPRF-205ENST00000414879 SRSF8Q9BRL6 282 aaKnown RBP9.96□□□□□ -0.82
PTPRF-205ENST00000414879 GCGP01275 180 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 FABP4P15090 132 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 QRFPP83859 136 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 ZNF525Q8N782 197 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 SOX21Q9Y651 276 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-205ENST00000414879 FREM3P0C091 2139 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 M0R2Z0 102 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 SRSF12Q8WXF0 261 aaKnown RBP9.95□□□□□ -0.82
PTPRF-205ENST00000414879 SRD5A3Q9H8P0 318 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 IGKV1D-13A0A0B4J2D9 117 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 A0A1B0GW15 77 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 SPINK4O60575 86 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 CD5P06127 495 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 IGKV1-13P0DP09 117 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 MFAP2P55001 183 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 TAS2R60P59551 318 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 Q6AWC8 147 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 LINC00305Q7Z4B0 112 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 RCC1LQ96I51 464 aaKnown RBP9.95□□□□□ -0.82
PTPRF-205ENST00000414879 GPHA2Q96T91 129 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 CEP250Q9BV73 2442 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 PPP1R17O96001 155 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 WFDC3Q8IUB2 231 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 SLC50A1Q9BRV3 221 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 RPRMQ9NS64 109 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 FOXA2Q9Y261 457 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-205ENST00000414879 FANCMQ8IYD8 2048 aa9.95□□□□□ -0.82
PTPRF-205ENST00000414879 IGKV1-27A0A075B6S5 117 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 TRAV20A0A0B4J274 112 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 NPIPB6E9PJ23 425 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 NBEAP1P0C6P0 100 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 IGHV1-8P0DP01 117 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 FCER1GP30273 86 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 TCL1AP56279 114 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 PMS2P11Q13670 270 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 SMUG1Q53HV7 270 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 LYRM7Q5U5X0 104 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 PET117Q6UWS5 81 aa9.94□□□□□ -0.82
PTPRF-205ENST00000414879 TOMM20LQ6UXN7 152 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms