RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 B9A039 149 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 CD3EP07766 207 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 PRCDQ00LT1 54 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 LINC00311Q8N616 119 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 SMIM7Q9BQ49 75 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 GGTLC1Q9BX51 225 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 TMPRSS5Q9H3S3 457 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 A0A1W2PPV4 95 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 C5orf52A6NGY3 159 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 AKR1D1P51857 326 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 ZNF596Q8TC21 504 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 NEIL1Q96FI4 390 aaPredicted RBP17.57■□□□□ 0.4
TRIM54-202ENST00000380075 MGST2Q99735 147 aa17.57■□□□□ 0.4
TRIM54-202ENST00000380075 CLDN34H7C241 214 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 HMGB3O15347 200 aaKnown RBP17.56■□□□□ 0.4
TRIM54-202ENST00000380075 RND2P52198 227 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 RAB31Q13636 194 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 OR5B3Q8NH48 314 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 PLEKHA3Q9HB20 300 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 PXMP4Q9Y6I8 212 aa17.56■□□□□ 0.4
TRIM54-202ENST00000380075 J3QR06 171 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 TMEM241Q24JQ0 296 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 Q8WTZ3 238 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 SPOCK3Q9BQ16 436 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 DOCK11Q5JSL3 2073 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 UBE2CO00762 179 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 CA2P00918 260 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 CCL3L1P16619 93 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 TEPPQ6URK8 271 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 OR5AN1Q8NGI8 311 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 H1FXQ92522 213 aaKnown RBP17.55■□□□□ 0.4
TRIM54-202ENST00000380075 TMEM186Q96B77 213 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 TXNDC17Q9BRA2 123 aa17.55■□□□□ 0.4
TRIM54-202ENST00000380075 ANKHD1Q8IWZ3 2542 aaKnown RBP17.54■□□□□ 0.4
TRIM54-202ENST00000380075 FCN3O75636 299 aa17.54■□□□□ 0.4
TRIM54-202ENST00000380075 EIF3GO75821 320 aaKnown RBP eCLIP17.54■□□□□ 0.4
TRIM54-202ENST00000380075 YIF1AO95070 293 aa17.54■□□□□ 0.4
TRIM54-202ENST00000380075 IGKV1-16P04430 117 aa17.54■□□□□ 0.4
TRIM54-202ENST00000380075 RPL35P42766 123 aaKnown RBP17.54■□□□□ 0.4
TRIM54-202ENST00000380075 SNRPEP62304 92 aaKnown RBP17.54■□□□□ 0.4
TRIM54-202ENST00000380075 HIST2H2BCQ6DN03 193 aa17.54■□□□□ 0.4
TRIM54-202ENST00000380075 IQCF2Q8IXL9 164 aa17.54■□□□□ 0.4
TRIM54-202ENST00000380075 METTL1Q9UBP6 276 aaKnown RBP17.54■□□□□ 0.4
TRIM54-202ENST00000380075 IGHV1-69-2A0A0G2JMI3 117 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 TGOLN2O43493 480 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 RPS10P46783 165 aaKnown RBP17.53■□□□□ 0.4
TRIM54-202ENST00000380075 TMEM177Q53S58 311 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OR4F5Q8NH21 305 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OR4F4Q96R69 305 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 MRPL20Q9BYC9 149 aaKnown RBP17.53■□□□□ 0.4
TRIM54-202ENST00000380075 CRYBG3Q68DQ2 2970 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 NBPF19A0A087WUL8 3843 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 A0A087X0M5 115 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 A0A1B0GX30 115 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 H0YJW9 148 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 DVL1O14640 695 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 PDE6DO43924 150 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 PAGE4O60829 102 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OPN1MWP04001 364 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OPN1MW2P0DN77 364 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OPN1MW3P0DN78 364 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 ERVFRD-1P60508 538 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 ARSJQ5FYB0 599 aaPredicted RBP17.53■□□□□ 0.4
TRIM54-202ENST00000380075 OR4A5Q8NH83 315 aa17.53■□□□□ 0.4
TRIM54-202ENST00000380075 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.52■□□□□ 0.4
TRIM54-202ENST00000380075 SRRM4A7MD48 611 aaKnown RBP17.52■□□□□ 0.4
TRIM54-202ENST00000380075 SAA1P0DJI8 122 aaPredicted RBP17.52■□□□□ 0.4
TRIM54-202ENST00000380075 LOXP28300 417 aaPredicted RBP17.52■□□□□ 0.4
TRIM54-202ENST00000380075 RPL29P47914 159 aaKnown RBP17.52■□□□□ 0.4
TRIM54-202ENST00000380075 LYPD2Q6UXB3 125 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 PDPNQ86YL7 162 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 OR10X1Q8NGY0 326 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 NEUROG1Q92886 237 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 PARLQ9H300 379 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 CTSZQ9UBR2 303 aa17.52■□□□□ 0.4
TRIM54-202ENST00000380075 TRBV23-1A0A0A0MS06 115 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 FSTL3O95633 263 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 IGHV2-5P01817 119 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 STAG3L2P0CL84 134 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 STAG3L3P0CL85 134 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 COX6B1P14854 86 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 ZNF137PP52743 207 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 TMEM155Q4W5P6 130 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 C2orf83Q53S99 150 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 ZNF343Q6P1L6 599 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 VSTM2AQ8TAG5 236 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 NANPQ8TBE9 248 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 HARBI1Q96MB7 349 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 PCGF1Q9BSM1 259 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 TEX50A0A1B0GTY4 177 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 C11orf94C9JXX5 98 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 INS-IGF2F8WCM5 200 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 VENTXO95231 258 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 CXorf1O96002 111 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 DLX6P56179 175 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 B2MP61769 119 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 GCSAMLQ5JQS6 135 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 MIC13Q5XKP0 118 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 OR1L8Q8NGR8 309 aa17.51■□□□□ 0.39
TRIM54-202ENST00000380075 RPUSD4Q96CM3 377 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms