RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 ZNF439Q8NDP4 499 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 DEFB108BQ8NET1 73 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 OR4P4Q8NGL7 312 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 GCM1Q9NP62 436 aa20.75■□□□□ 0.91
C9orf40-201ENST00000376854 STUMQ69YW2 141 aa20.74■□□□□ 0.91
C9orf40-201ENST00000376854 RP1L1Q8IWN7 2480 aaPredicted RBP20.74■□□□□ 0.91
C9orf40-201ENST00000376854 PRR20EP86478 221 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 PRR20CP86479 221 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 PRR20DP86480 221 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 PRR20BP86481 221 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 PRR20AP86496 221 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 ZNF600Q6ZNG1 722 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 ZCCHC14Q8WYQ9 949 aaKnown RBP20.73■□□□□ 0.91
C9orf40-201ENST00000376854 WFIKKN1Q96NZ8 548 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 TP53TG5Q9Y2B4 290 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 TNFAIP6P98066 277 aaPredicted RBP20.73■□□□□ 0.91
C9orf40-201ENST00000376854 NEUROG1Q92886 237 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 NOL4LQ96MY1 436 aaPredicted RBP20.73■□□□□ 0.91
C9orf40-201ENST00000376854 GAFA1Q96PS6 74 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 PRNDQ9UKY0 176 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 FAM215AQ9Y5M1 114 aa20.73■□□□□ 0.91
C9orf40-201ENST00000376854 A8MWP6 167 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 POU2AF1Q16633 256 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 CORO2AQ92828 525 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 UHRF2Q96PU4 802 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 CCL13Q99616 98 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 RIF1Q5UIP0 2472 aaKnown RBP20.72■□□□□ 0.91
C9orf40-201ENST00000376854 J3QR06 171 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 K7EN84 100 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 C3orf36Q3SXR2 165 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 C11orf52Q96A22 123 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 PLEKHA3Q9HB20 300 aa20.72■□□□□ 0.91
C9orf40-201ENST00000376854 ZFHX2Q9C0A1 2572 aaPredicted RBP20.72■□□□□ 0.91
C9orf40-201ENST00000376854 ACTL6BO94805 426 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 IGF2-ASQ6U949 168 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 TMEM256Q8N2U0 113 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 A0A1B0GUS0 222 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 FNDC10F2Z333 226 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 MMP23AO75900 390 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 IGHV1-46P01743 117 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 LINC00869P0C866 280 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 ADMP35318 185 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 SELENOVP59797 346 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 HLA-DRB5Q30154 266 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 MIR17HGQ75NE6 70 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 FAM122AQ96E09 287 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 LRFN3Q9BTN0 628 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 IL19Q9UHD0 177 aa20.71■□□□□ 0.91
C9orf40-201ENST00000376854 K7EM74 188 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 YPEL3P61236 119 aaPredicted RBP20.7■□□□□ 0.9
C9orf40-201ENST00000376854 ZNF90Q03938 601 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 FAM216BQ8N7L0 139 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 SFXN3Q9BWM7 321 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 DSCAMO60469 2012 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 IL36BQ9NZH7 164 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 ZNF257Q9Y2Q1 563 aa20.7■□□□□ 0.9
C9orf40-201ENST00000376854 C9JCJ5 164 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 SLC17A3O00476 420 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 UPK2O00526 184 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 PRCDQ00LT1 54 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 IQCJQ1A5X6 159 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 SLC45A2Q9UMX9 530 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 IGKV1-16P04430 117 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 CT45A6P0DMU7 189 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 CT45A5P0DMU8 189 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 CT45A7P0DMV0 189 aa20.69■□□□□ 0.9
C9orf40-201ENST00000376854 A0A1B0GV90 55 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 AREGP15514 252 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 RTL8BQ17RB0 113 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 MOB3BQ86TA1 216 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 EAF1Q96JC9 268 aaPredicted RBP20.68■□□□□ 0.9
C9orf40-201ENST00000376854 LINC00574Q9H8X3 128 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 SLC35D1Q9NTN3 355 aa20.68■□□□□ 0.9
C9orf40-201ENST00000376854 SLC25A10Q9UBX3 287 aaPredicted RBP20.68■□□□□ 0.9
C9orf40-201ENST00000376854 SRRM4A7MD48 611 aaKnown RBP20.67■□□□□ 0.9
C9orf40-201ENST00000376854 TM4SF5O14894 197 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 NUPR1O60356 82 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 PSG5Q15238 335 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 C1orf185Q5T7R7 199 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 ZNF788Q6ZQV5 615 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 SLC25A48Q6ZT89 311 aaKnown RBP20.67■□□□□ 0.9
C9orf40-201ENST00000376854 NABP2Q9BQ15 211 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 ZNRD1Q9P1U0 126 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 RPUSD1Q9UJJ7 312 aaKnown RBP20.67■□□□□ 0.9
C9orf40-201ENST00000376854 LY96Q9Y6Y9 160 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 SMG1Q96Q15 3661 aaKnown RBP20.67■□□□□ 0.9
C9orf40-201ENST00000376854 A8MXE2 369 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 OR4A8P0C604 315 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 SSX2Q16385 188 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 MAP1BP46821 2468 aaKnown RBP20.67■□□□□ 0.9
C9orf40-201ENST00000376854 CEP250Q9BV73 2442 aa20.67■□□□□ 0.9
C9orf40-201ENST00000376854 SNRNP40Q96DI7 357 aaKnown RBP20.66■□□□□ 0.9
C9orf40-201ENST00000376854 FKBP11Q9NYL4 201 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 TRAV9-1A0A075B6T8 112 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 CBLN1P23435 193 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 TNFSF4P23510 183 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 NDUFAF3Q9BU61 184 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 ICE1Q9Y2F5 2266 aa20.66■□□□□ 0.9
C9orf40-201ENST00000376854 TEX50A0A1B0GTY4 177 aa20.65■□□□□ 0.9
C9orf40-201ENST00000376854 GRIFINA4D1Z8 144 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms