RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 TRAV1-1A0A0B4J248 108 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 ACSF3Q4G176 576 aaPredicted RBP13.41□□□□□ -0.26
COL17A1-202ENST00000369733 ZNF324O75467 553 aaPredicted RBP13.41□□□□□ -0.26
COL17A1-202ENST00000369733 LYL1P12980 280 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 NRN1LQ496H8 165 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 OCC1Q8TAD7 63 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 RPP21Q9H633 154 aaKnown RBP13.41□□□□□ -0.26
COL17A1-202ENST00000369733 HILPDAQ9Y5L2 63 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 CEACAM1P13688 526 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 FAM131CQ96AQ9 280 aa13.41□□□□□ -0.26
COL17A1-202ENST00000369733 TNFSF13O75888 250 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 NBEAP1P0C6P0 100 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 FBLN7Q53RD9 439 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 CCDC144NLQ6NUI1 221 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 RAMP3O60896 148 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 GATA2P23769 480 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-202ENST00000369733 MST1LQ2TV78 715 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 TMEM30BQ3MIR4 351 aa13.4□□□□□ -0.26
COL17A1-202ENST00000369733 CGB1A6NKQ9 187 aa13.4□□□□□ -0.27
COL17A1-202ENST00000369733 HIGD1CA8MV81 97 aa13.4□□□□□ -0.27
COL17A1-202ENST00000369733 C1orf194Q5T5A4 169 aa13.4□□□□□ -0.27
COL17A1-202ENST00000369733 VWCEQ96DN2 955 aa13.4□□□□□ -0.27
COL17A1-202ENST00000369733 SOX21Q9Y651 276 aaPredicted RBP13.4□□□□□ -0.27
COL17A1-202ENST00000369733 TRAV9-2A0A087WT02 112 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 TEX38Q6PEX7 206 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF71Q9NQZ8 489 aaPredicted RBP13.39□□□□□ -0.27
COL17A1-202ENST00000369733 C1orf185Q5T7R7 199 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 WBP1Q96G27 269 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 LINC00271P0C7V0 271 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 OR10J3Q5JRS4 329 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 BEND2Q8NDZ0 799 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 TMEM186Q96B77 213 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 PRELID3AQ96N28 172 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 C2orf88Q9BSF0 95 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 DCTN5Q9BTE1 182 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 IGKV1-12A0A0C4DH73 117 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 EPOPA6NHQ4 379 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 IGKV1D-12P01611 117 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 QRFPP83859 136 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 GNB1LQ9BYB4 327 aa13.39□□□□□ -0.27
COL17A1-202ENST00000369733 AKIRIN1Q9H9L7 192 aaPredicted RBP13.39□□□□□ -0.27
COL17A1-202ENST00000369733 RELQ04864 619 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-202ENST00000369733 GCSAMLQ5JQS6 135 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 DNASE2BQ8WZ79 361 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 HTN1P15515 57 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 MFAP4P55083 255 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 CX3CL1P78423 397 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 TIMP4Q99727 224 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 SSBP4Q9BWG4 385 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-202ENST00000369733 SPCS1Q9Y6A9 102 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 SBF1O95248 1867 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 KNTC1P50748 2209 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 TRAV24A0A0B4J272 114 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 A0A0G2JMM0 328 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 A0A1W2PPB8 328 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 A0A1W2PRS3 328 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 KIR3DP1A8MWS1 328 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 CELA3AP09093 270 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 SHISA5Q8N114 240 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF441Q8N8Z8 693 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 C18orf15Q96N68 181 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 DEPPQ9NTK1 212 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 AHRRA9YTQ3 701 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 GTF3AQ92664 365 aaKnown RBP13.38□□□□□ -0.27
COL17A1-202ENST00000369733 TMEM208Q9BTX3 173 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 OSTCQ9NRP0 149 aa13.38□□□□□ -0.27
COL17A1-202ENST00000369733 KIF26BQ2KJY2 2108 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 A0A1B0GUT8 65 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 C9JQL5 133 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 DLEU1O43261 78 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 RNF144BQ7Z419 303 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 PPP1R32Q7Z5V6 425 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 RABAC1Q9UI14 185 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF256Q9Y2P7 627 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-202ENST00000369733 TP53BP1Q12888 1972 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-202ENST00000369733 TRAV30A0A087WSZ9 112 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 GPR183P32249 361 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 FMC1Q96HJ9 113 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 C16orf92Q96LL3 132 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 KLK15Q9H2R5 256 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 TMEM160Q9NX00 188 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 A0A1B0GV72 72 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 AREGP15514 252 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 OR9G1Q8NH87 305 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 ACTL10Q5JWF8 245 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF497Q6ZNH5 498 aa13.37□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-202ENST00000369733 ZNF703Q9H7S9 590 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-202ENST00000369733 GFRA1P56159 465 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 HGFACQ04756 655 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 TM4SF20Q53R12 229 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 TRAV8-6A0A0B4J262 113 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 CDX4O14627 284 aaPredicted RBP13.36□□□□□ -0.27
COL17A1-202ENST00000369733 IL4P05112 153 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 WFDC3Q8IUB2 231 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 CRIPAKQ8N1N5 446 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 ARTNQ5T4W7 220 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 OR52E5Q8NH55 327 aa13.36□□□□□ -0.27
COL17A1-202ENST00000369733 OSR1Q8TAX0 266 aaPredicted RBP13.36□□□□□ -0.27
COL17A1-202ENST00000369733 KLHDC3Q9BQ90 382 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms