RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PVALBP20472 110 aaPredicted RBP15.83■□□□□ 0.12
CLN3-205ENST00000359984 SSBP2P81877 361 aaPredicted RBP15.83■□□□□ 0.12
CLN3-205ENST00000359984 SLC51BQ86UW2 128 aa15.83■□□□□ 0.12
CLN3-205ENST00000359984 OR1L8Q8NGR8 309 aa15.83■□□□□ 0.12
CLN3-205ENST00000359984 HINT2Q9BX68 163 aa15.83■□□□□ 0.12
CLN3-205ENST00000359984 TET2Q6N021 2002 aaPredicted RBP15.83■□□□□ 0.12
CLN3-205ENST00000359984 SONP18583 2426 aaKnown RBP15.83■□□□□ 0.12
CLN3-205ENST00000359984 MAS1LP35410 378 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 VAMP2P63027 116 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 TNXAQ16473 311 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 LY6EQ16553 131 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 SLC25A33Q9BSK2 321 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 PRDM13Q9H4Q3 707 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 NDUFA4L2Q9NRX3 87 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 CGB1A6NKQ9 187 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 IGHV4-59P01825 116 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 IER3P46695 156 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 AP2S1P53680 142 aaPredicted RBP15.82■□□□□ 0.12
CLN3-205ENST00000359984 GNB1P62873 340 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 PRCDQ00LT1 54 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 Q6YL49 198 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 SMIM8Q96KF7 97 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 TMEM160Q9NX00 188 aa15.82■□□□□ 0.12
CLN3-205ENST00000359984 NAV3Q8IVL0 2385 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 A0A1B0GW64 132 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 MSGN1A6NI15 193 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 ACTL6BO94805 426 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 CA2P00918 260 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 FOSL1P15407 271 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 HNF1AP20823 631 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 VDAC2P45880 294 aaPredicted RBP15.81■□□□□ 0.12
CLN3-205ENST00000359984 P2RY1P47900 373 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 COMPP49747 757 aaPredicted RBP15.81■□□□□ 0.12
CLN3-205ENST00000359984 PSENENQ9NZ42 101 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 WSB1Q9Y6I7 421 aa15.81■□□□□ 0.12
CLN3-205ENST00000359984 H3BP45 60 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 BCL2L11O43521 198 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 TAS2R30P59541 319 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 TUSC1Q2TAM9 212 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 INO80EQ8NBZ0 244 aaPredicted RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 SCARB1Q8WTV0 552 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 MOB4Q9Y3A3 225 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 PLXNB1O43157 2135 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 FAM24AA6NFZ4 105 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 GPR137BO60478 399 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 HKR1P10072 659 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 RPL27AP46776 148 aaKnown RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 HOXA1P49639 335 aaPredicted RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 CAV2P51636 162 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 RPL23AP62750 156 aaKnown RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 OR2C3Q8N628 320 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 C5orf56Q8N8D9 126 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 OR10W1Q8NGF6 305 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 CIB3Q96Q77 187 aaPredicted RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 RASL11BQ9BPW5 248 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 LYRM2Q9NU23 88 aaPredicted RBP15.8■□□□□ 0.12
CLN3-205ENST00000359984 PITPNC1Q9UKF7 332 aa15.8■□□□□ 0.12
CLN3-205ENST00000359984 HIVEP1P15822 2718 aa15.79■□□□□ 0.12
CLN3-205ENST00000359984 RPL12P30050 165 aaKnown RBP15.79■□□□□ 0.12
CLN3-205ENST00000359984 PCNPQ8WW12 178 aaKnown RBP15.79■□□□□ 0.12
CLN3-205ENST00000359984 AQP10Q96PS8 301 aa15.79■□□□□ 0.12
CLN3-205ENST00000359984 PLEKHA3Q9HB20 300 aa15.79■□□□□ 0.12
CLN3-205ENST00000359984 HEYLQ9NQ87 328 aaPredicted RBP15.79■□□□□ 0.12
CLN3-205ENST00000359984 ZFHX3Q15911 3703 aa15.79■□□□□ 0.12
CLN3-205ENST00000359984 IGSF23A1L1A6 192 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 NUP62P37198 522 aaPredicted RBP15.78■□□□□ 0.12
CLN3-205ENST00000359984 UBA52P62987 128 aaKnown RBP15.78■□□□□ 0.12
CLN3-205ENST00000359984 CX3CL1P78423 397 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 SPANXN5Q5MJ07 72 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 ALKAL2Q6UX46 152 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 CLEC9AQ6UXN8 241 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 ZNF562Q6V9R5 426 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 OR5R1Q8NH85 324 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 ST8SIA2Q92186 375 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 HIPK2Q9H2X6 1198 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 ENY2Q9NPA8 101 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 KANTRA0A1W2PQU2 76 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 FGF16O43320 207 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 CNIH1O95406 144 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 AMY1AP04745 511 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 RAB14P61106 215 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 FXYD3Q14802 87 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 TMEM252Q8N6L7 170 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 SIGLECL1Q8N7X8 197 aa15.78■□□□□ 0.12
CLN3-205ENST00000359984 SRSF12Q8WXF0 261 aaKnown RBP15.78■□□□□ 0.12
CLN3-205ENST00000359984 HLA-DRB1P01911 266 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 NMBP08949 121 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 SSMEM1Q8WWF3 244 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 OR4C12Q96R67 309 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 CITED4Q96RK1 184 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 ARPC5LQ9BPX5 153 aa15.77■□□□□ 0.11
CLN3-205ENST00000359984 ANK3Q12955 4377 aaKnown RBP15.76■□□□□ 0.11
CLN3-205ENST00000359984 IGHV7-81A0A0B4J1V7 117 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 A0A1W2PN81 502 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 HOXA3O43365 443 aaPredicted RBP15.76■□□□□ 0.11
CLN3-205ENST00000359984 LY86O95711 162 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 CHRNA7P36544 502 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 TNFRSF19Q9NS68 423 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 BTBD17A6NE02 478 aa15.76■□□□□ 0.11
CLN3-205ENST00000359984 SH2D7A6NKC9 451 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms