RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HCP5Q6MZN7 132 aa12.02□□□□□ -0.48
CCDC47-201ENST00000225726 IGHV2-70DA0A0C4DH43 119 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 SSTP61278 116 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 MAJINQ3KP22 176 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 TPTE2P1Q5T6R2 138 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 MOB3BQ86TA1 216 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 PIMREGQ9BSJ6 248 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 MYOD1P15172 320 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 S100A7P31151 101 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 RAB11AP62491 216 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 RPL8P62917 257 aaKnown RBP12.02□□□□□ -0.49
CCDC47-201ENST00000225726 LCN2P80188 198 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 AKR1C8PQ5T2L2 129 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 TAF15Q92804 592 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC47-201ENST00000225726 PLEKHA3Q9HB20 300 aa12.02□□□□□ -0.49
CCDC47-201ENST00000225726 HTR1DP28221 377 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 DPPA3Q6W0C5 159 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 VMO1Q7Z5L0 202 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 FAM213BQ8TBF2 198 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 IGHV3-72A0A0B4J1Y9 119 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 CEACAM3P40198 252 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 ZNF616Q08AN1 781 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 KLRD1Q13241 179 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 ISOC2Q96AB3 205 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 RSG1Q9BU20 258 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 DPM3Q9P2X0 92 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 TIMM9Q9Y5J7 89 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 NDUFS8O00217 210 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 RRHO14718 337 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 S100PP25815 95 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 FHITP49789 147 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 SLC24A4Q8NFF2 622 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 FAM168AQ92567 244 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 C20orf24Q9BUV8 137 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 GGACTQ9BVM4 153 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 HINT2Q9BX68 163 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 SIRPDQ9H106 197 aa12.01□□□□□ -0.49
CCDC47-201ENST00000225726 A0A1W2PPI3 338 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 COMMD5Q9GZQ3 224 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 FBXO7Q9Y3I1 522 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 FOXH1O75593 365 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 NPY1RP25929 384 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 SP5Q6BEB4 398 aaPredicted RBP12□□□□□ -0.49
CCDC47-201ENST00000225726 COMMD1Q8N668 190 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 TEX45Q8NA69 505 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 OR1L8Q8NGR8 309 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 C10orf105Q8TEF2 133 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 TMEM170AQ8WVE7 144 aa12□□□□□ -0.49
CCDC47-201ENST00000225726 PRSS46E5RG02 174 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 TSPAN15O95858 294 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 HOXB4P17483 251 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 SERF2P84101 59 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 RITA1Q96K30 269 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 SLC25A17O43808 307 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 FGF7P21781 194 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 ATP5J2P56134 94 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 ATP5IP56385 69 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 DLK1P80370 383 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 LDLRAD2Q5SZI1 272 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 CENPVQ7Z7K6 275 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 RNF5Q99942 180 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 NDUFA4L2Q9NRX3 87 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 TCAPO15273 167 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 MDKP21741 143 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 CLEC2AQ6UVW9 174 aa11.99□□□□□ -0.49
CCDC47-201ENST00000225726 ZNF430Q9H8G1 570 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 POLR3KQ9Y2Y1 108 aaPredicted RBP11.99□□□□□ -0.49
CCDC47-201ENST00000225726 INS-IGF2F8WCM5 200 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 CA2P00918 260 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 MBP02144 154 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 NPBWR1P48145 328 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 VWC2LB2RUY7 222 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 OPN1MWP04001 364 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 IFNA4P05014 189 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 OPN1MW2P0DN77 364 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 OPN1MW3P0DN78 364 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 FAM96BQ9Y3D0 163 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 A0A1W2PN81 502 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 CRYGBP07316 175 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 CD1BP29016 333 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 CHRNA7P36544 502 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 PSG5Q15238 335 aa11.98□□□□□ -0.49
CCDC47-201ENST00000225726 ZFYVE26Q68DK2 2539 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 ZNF462Q96JM2 2506 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 ARHGAP32A7KAX9 2087 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 USP9XQ93008 2570 aaPredicted RBP11.97□□□□□ -0.49
CCDC47-201ENST00000225726 RNASEK-C17orf49H0YIS7 233 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 GATCO43716 136 aaKnown RBP11.97□□□□□ -0.49
CCDC47-201ENST00000225726 PAX1P15863 534 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 RAB5BP61020 215 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 MINOS1Q5TGZ0 78 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 MINOS1-NBL1R4GNA1 71 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 A1L4Q6 167 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 TIMM23O14925 209 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 TOX4O94842 621 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 YIF1AO95070 293 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 DVL1P1P54792 670 aaPredicted RBP11.97□□□□□ -0.49
CCDC47-201ENST00000225726 MRGPRG-AS1Q2M3A8 158 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 BSXQ3C1V8 233 aa11.97□□□□□ -0.49
CCDC47-201ENST00000225726 C2orf83Q53S99 150 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms