RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 LHFPL6Q9Y693 200 aa0.7□□□□□ -2.3
SMCHD1-207ENST00000581711 TONSLQ96HA7 1378 aa0.7□□□□□ -2.3
SMCHD1-207ENST00000581711 TTC28Q96AY4 2481 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 IGKV1-9A0A0C4DH69 117 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 TMEM212A6NML5 194 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 F5H768 121 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 I3L521 148 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 HLA-DRAP01903 254 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 CCL1P22362 96 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 TNFAIP8L3Q5GJ75 292 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 ZNF439Q8NDP4 499 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 SMIM19Q96E16 107 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 GMEB1Q9Y692 573 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 NCOR1O75376 2440 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 TRANK1O15050 2925 aa0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 NCOA6Q14686 2063 aaPredicted RBP0.69□□□□□ -2.3
SMCHD1-207ENST00000581711 COL6A5A8TX70 2615 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 LST1O00453 97 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 COCHO43405 550 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 HAAOP46952 286 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 CSN1S1P47710 185 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 REG1BP48304 166 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 RAB13P51153 203 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 UBE2G2P60604 165 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 PTPN13Q12923 2485 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 DEFB115Q30KQ5 88 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 C10orf55Q5SWW7 151 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 DCXRQ7Z4W1 244 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 TBC1D19Q8N5T2 526 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 OR1M1Q8NGA1 313 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 DHRS9Q9BPW9 319 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 C7orf50Q9BRJ6 194 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 UPF3BQ9BZI7 483 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 GPR84Q9NQS5 396 aa0.68□□□□□ -2.3
SMCHD1-207ENST00000581711 ANKHD1Q8IWZ3 2542 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 A0A1B0GW54 56 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 NPPAP01160 153 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 MSMBP08118 114 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 PSMB6P28072 239 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 DHFR2Q86XF0 187 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 SLC22A24Q8N4F4 322 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 TMEM251Q8N6I4 163 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 OR7G1Q8NGA0 311 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 KCTD7Q96MP8 289 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 CHMP4BQ9H444 224 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 SPACA1Q9HBV2 294 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 PXMP4Q9Y6I8 212 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 CACNA1BQ00975 2339 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 MAST2Q6P0Q8 1798 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 VWFP04275 2813 aa0.67□□□□□ -2.3
SMCHD1-207ENST00000581711 STRCQ7RTU9 1775 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 TRBV10-2A0A0K0K1G8 114 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 SDCBPO00560 298 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 GEMIN2O14893 280 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 RNASE3P12724 160 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 DDTP30046 118 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 S100A7P31151 101 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 TNFAIP6P98066 277 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 FAM78BQ5VT40 261 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 HIST2H3AQ71DI3 136 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 C10orf67Q8IYJ2 551 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 ZNF565Q8N9K5 539 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 TMEM161BQ8NDZ6 487 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 ANKRD7Q92527 254 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 XAGE1AQ9HD64 81 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 PAQR5Q9NXK6 330 aaPredicted RBP0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 DKKL1Q9UK85 242 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 BAIAP2Q9UQB8 552 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
SMCHD1-207ENST00000581711 RAD50Q92878 1312 aa0.65□□□□□ -2.3
SMCHD1-207ENST00000581711 KMT2DO14686 5537 aa0.65□□□□□ -2.3
SMCHD1-207ENST00000581711 GGT3PA6NGU5 568 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 PMP2P02689 132 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 SULT1A3P0DMM9 295 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 SULT1A4P0DMN0 295 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 CDC34P49427 236 aaPredicted RBP0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 OR4D2P58180 307 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 RUNX1Q01196 453 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 ZNF345Q14585 488 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 CST9Q5W186 159 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 GID4Q8IVV7 300 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 FAM19A2Q8N3H0 131 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 SPANXB1Q9NS25 103 aaPredicted RBP0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 C15orf41Q9Y2V0 281 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 KMT2CQ8NEZ4 4911 aaKnown RBP0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 RYR2Q92736 4967 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 EXPH5Q8NEV8 1989 aa0.65□□□□□ -2.31
SMCHD1-207ENST00000581711 MED12LQ86YW9 2145 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 IRGMA1A4Y4 181 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 CALUO43852 315 aaPredicted RBP0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 TYMSP04818 313 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 IL3P08700 152 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 MAP2K4P45985 399 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 SUPT4H1P63272 117 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 RSU1Q15404 277 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 C5orf46Q6UWT4 87 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 COMMD7Q86VX2 200 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 POLR1DQ9Y2S0 133 aa0.64□□□□□ -2.31
SMCHD1-207ENST00000581711 SNURFQ9Y675 71 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms