RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CITED1Q99966 193 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 PCGF1Q9BSM1 259 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 C1RLQ9NZP8 487 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 RNF114Q9Y508 228 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 WSB1Q9Y6I7 421 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 TANC2Q9HCD6 1990 aa8.2□□□□□ -1.1
SS18-207ENST00000577636 PRKDCP78527 4128 aaKnown RBP8.19□□□□□ -1.1
SS18-207ENST00000577636 IGHV2-26A0A0B4J1V2 119 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 MSGN1A6NI15 193 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 CEBPZOSA8MTT3 80 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 PROP1O75360 226 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 IFNA17P01571 189 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 GAPDHP04406 335 aaKnown RBP8.19□□□□□ -1.1
SS18-207ENST00000577636 CT45A6P0DMU7 189 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 CT45A5P0DMU8 189 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 CT45A7P0DMV0 189 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 UBE2KP61086 200 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 HBG1P69891 147 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 HBG2P69892 147 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 RELBQ01201 579 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 EWSR1Q01844 656 aaKnown RBP eCLIP8.19□□□□□ -1.1
SS18-207ENST00000577636 TNFRSF9Q07011 255 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ZNF266Q14584 549 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 RUSC1-AS1Q66K80 236 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ALKAL2Q6UX46 152 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 C1orf122Q6ZSJ8 110 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 SSX9Q7RTT3 188 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ODF3L1Q8IXM7 274 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ZNF383Q8NA42 475 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 BEND2Q8NDZ0 799 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 OSR1Q8TAX0 266 aaPredicted RBP8.19□□□□□ -1.1
SS18-207ENST00000577636 DDB2Q92466 427 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 LHX4Q969G2 390 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 SMIM8Q96KF7 97 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 RHOVQ96L33 236 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ZNF251Q9BRH9 671 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 HIPK2Q9H2X6 1198 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 ENY2Q9NPA8 101 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 FKBP11Q9NYL4 201 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 PSENENQ9NZ42 101 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 HSPB7Q9UBY9 170 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 FBXL17Q9UF56 701 aa8.19□□□□□ -1.1
SS18-207ENST00000577636 IGHV2-70DA0A0C4DH43 119 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 FAM24AA6NFZ4 105 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 A8MXK9 166 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 SHOXO15266 292 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 DFFBO76075 338 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 TSPAN15O95858 294 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 PRB2P02812 416 aaPredicted RBP8.18□□□□□ -1.1
SS18-207ENST00000577636 P0C879 139 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 COX7A1P24310 79 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 SULT1A1P50225 295 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 ZNF137PP52743 207 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 BRWD1-AS2P59051 145 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 ARF6P62330 175 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 IZUMO4Q1ZYL8 232 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 HLA-DRB5Q30154 266 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 CLLU1Q5K131 121 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 SLC25A24Q6NUK1 477 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 Q6YL49 198 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 Q6ZRM9 215 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 C9orf139Q6ZV77 190 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 PDPNQ86YL7 162 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 PDZD9Q8IXQ8 264 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 OR4C13Q8NGP0 309 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 OR1S2Q8NGQ3 325 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 VSTM2AQ8TAG5 236 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 FLYWCH2Q96CP2 140 aaKnown RBP8.18□□□□□ -1.1
SS18-207ENST00000577636 TSNAXQ99598 290 aaKnown RBP8.18□□□□□ -1.1
SS18-207ENST00000577636 MRPL20Q9BYC9 149 aaKnown RBP8.18□□□□□ -1.1
SS18-207ENST00000577636 SMIM3Q9BZL3 60 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 SLC25A32Q9H2D1 315 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 RBKSQ9H477 322 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 TMEM140Q9NV12 185 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 PRNDQ9UKY0 176 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 WASHC3Q9Y3C0 194 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 KPTNQ9Y664 436 aa8.18□□□□□ -1.1
SS18-207ENST00000577636 LEUTXA8MZ59 168 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 C22orf46C9J442 243 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 BUB1B-PAK6H3BSN5 160 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 ATP6V1G1O75348 118 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 NDUFA7O95182 113 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 CFDP00746 253 aaPredicted RBP8.17□□□□□ -1.1
SS18-207ENST00000577636 IFNA5P01569 189 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 IAPPP10997 89 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 HTR1DP28221 377 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 LINC00205P59089 165 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 SPCS3P61009 180 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 RPS16P62249 146 aaKnown RBP8.17□□□□□ -1.1
SS18-207ENST00000577636 FBLN7Q53RD9 439 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 UTF1Q5T230 341 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 PNKDQ8N490 385 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 TMEM252Q8N6L7 170 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 OR5AN1Q8NGI8 311 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 OR52E5Q8NH55 327 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 DTD1Q8TEA8 209 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 RPEQ96AT9 228 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 HARBI1Q96MB7 349 aa8.17□□□□□ -1.1
SS18-207ENST00000577636 STRAPQ9Y3F4 350 aaKnown RBP8.17□□□□□ -1.1
SS18-207ENST00000577636 H0YJW9 148 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms