RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 BMPR1BO00238 502 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 GPR31O00270 319 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 UPK2O00526 184 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 PGLYRP1O75594 196 aaPredicted RBP11.84□□□□□ -0.51
SF3B3-215ENST00000577085 FRMD6-AS1P0C7T7 363 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 RPA2P15927 270 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 ELK1P19419 428 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 F2RP25116 425 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 RCVRNP35243 200 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 GPR107Q5VW38 600 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 GPX8Q8TED1 209 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 DYNLRB2Q8TF09 96 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 DGCR14Q96DF8 476 aaKnown RBP11.84□□□□□ -0.51
SF3B3-215ENST00000577085 THYN1Q9P016 225 aa11.84□□□□□ -0.51
SF3B3-215ENST00000577085 MARCH11A6NNE9 402 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 PPP5D1E7EU14 171 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 GGCTO75223 188 aaKnown RBP11.83□□□□□ -0.52
SF3B3-215ENST00000577085 SNAPC5O75971 98 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 IGHV3-23P01764 117 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 IFNA6P05013 189 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 CRYGCP07315 174 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 CSN3P07498 182 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 MYOD1P15172 320 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 ARL3P36405 182 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 OR2B8PP59922 312 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 POU2AF1Q16633 256 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 PHLDA2Q53GA4 152 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 C19orf35Q6ZS72 473 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 GPR141Q7Z602 305 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 LYSMD2Q8IV50 215 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 Q8N402 240 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 CXorf58Q96LI9 332 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 QTRT1Q9BXR0 403 aaKnown RBP11.83□□□□□ -0.52
SF3B3-215ENST00000577085 ZMAT4Q9H898 229 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 SIGLEC8Q9NYZ4 499 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 COL7A1Q02388 2944 aa11.83□□□□□ -0.52
SF3B3-215ENST00000577085 GABARAPO95166 117 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 NDUFB8O95169 186 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 KRASP01116 189 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 ZNF182P17025 639 aaPredicted RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 CTRB1P17538 263 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 LPAR6P43657 344 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 RNASE12Q5GAN4 147 aaKnown RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 CTRB2Q6GPI1 263 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 CLEC19AQ6UXS0 136 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 IL34Q6ZMJ4 242 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 HSD17B13Q7Z5P4 300 aaPredicted RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 SRSF8Q9BRL6 282 aaKnown RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 HINT2Q9BX68 163 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 MRPS26Q9BYN8 205 aaKnown RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 NAA50Q9GZZ1 169 aaKnown RBP11.82□□□□□ -0.52
SF3B3-215ENST00000577085 FXYD6Q9H0Q3 95 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 S4R3C0 116 aa11.82□□□□□ -0.52
SF3B3-215ENST00000577085 TRBV7-1A0A0A6YYK4 115 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 TRAV3A0A0B4J244 114 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 A0A1B0GW64 132 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 ZNF320A2RRD8 509 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 OR2C1O95371 312 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 HLA-AP01891 365 aaKnown RBP11.81□□□□□ -0.52
SF3B3-215ENST00000577085 FGF2P09038 288 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 TRAPPC2P0DI81 140 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 TRAPPC2BP0DI82 140 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 SMIM18P0DKX4 95 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 IGHV4-30-4P0DP06 118 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 G6PCP35575 357 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 CTF1Q16619 201 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 FAM106AQ4KMX7 169 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 THOC7Q6I9Y2 204 aaKnown RBP11.81□□□□□ -0.52
SF3B3-215ENST00000577085 SBSPONQ8IVN8 264 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 SLC38A6Q8IZM9 456 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 C15orf40Q8WUR7 153 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 FCAMRQ8WWV6 532 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 FANCD2OSQ96PS1 177 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 TUBA4BQ9H853 241 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 EXTL2Q9UBQ6 330 aa11.81□□□□□ -0.52
SF3B3-215ENST00000577085 DNAH9Q9NYC9 4486 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 RGS5O15539 181 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 MECP2P51608 486 aaKnown RBP11.8□□□□□ -0.52
SF3B3-215ENST00000577085 OR1L8Q8NGR8 309 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 OR2K2Q8NGT1 345 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 TSC22D3Q99576 134 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 FKBP11Q9NYL4 201 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 OR51B2Q9Y5P1 312 aa11.8□□□□□ -0.52
SF3B3-215ENST00000577085 IGLV11-55A0A075B6I3 123 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 TEX50A0A1B0GTY4 177 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 IGLC7A0M8Q6 106 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 M0QYG6 137 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 OR13C7P0DN81 318 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 PGAM2P15259 253 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 RNASE10Q5GAN6 216 aaKnown RBP11.79□□□□□ -0.52
SF3B3-215ENST00000577085 TBC1D26Q86UD7 250 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 CCDC140Q96MF4 163 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 RCHY1Q96PM5 261 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 PRNDQ9UKY0 176 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 TNCP24821 2201 aa11.79□□□□□ -0.52
SF3B3-215ENST00000577085 SORL1Q92673 2214 aa11.78□□□□□ -0.52
SF3B3-215ENST00000577085 CGB1A6NKQ9 187 aa11.78□□□□□ -0.52
SF3B3-215ENST00000577085 LGALS9O00182 355 aa11.78□□□□□ -0.52
SF3B3-215ENST00000577085 CLEC3BP05452 202 aa11.78□□□□□ -0.52
SF3B3-215ENST00000577085 SERPINE2P07093 398 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms