RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PMP2P02689 132 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 EIF4EP06730 217 aaKnown RBP8.19□□□□□ -1.1
VPS39-208ENST00000564994 NQO2P16083 231 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 NAT1P18440 290 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 NCS1P62166 190 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 CATR1Q13166 79 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 CD300EQ496F6 205 aaPredicted RBP8.19□□□□□ -1.1
VPS39-208ENST00000564994 LCN12Q6JVE5 192 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 DHRS11Q6UWP2 260 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 Q8N402 240 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 SLC25A46Q96AG3 418 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 MOB3AQ96BX8 217 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 KCTD12Q96CX2 325 aaKnown RBP8.19□□□□□ -1.1
VPS39-208ENST00000564994 ZNF2Q9BSG1 426 aaPredicted RBP8.19□□□□□ -1.1
VPS39-208ENST00000564994 FUNDC2Q9BWH2 189 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 ZMAT4Q9H898 229 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 HRASLSQ9HDD0 168 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 TMEM140Q9NV12 185 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 TENM2Q9NT68 2774 aa8.19□□□□□ -1.1
VPS39-208ENST00000564994 PLECQ15149 4684 aaKnown RBP8.18□□□□□ -1.1
VPS39-208ENST00000564994 MFSD2BA6NFX1 497 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 C2orf70A6NJV1 201 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 ZNF785A8K8V0 405 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 GGCTO75223 188 aaKnown RBP8.18□□□□□ -1.1
VPS39-208ENST00000564994 PGLYRP1O75594 196 aaPredicted RBP8.18□□□□□ -1.1
VPS39-208ENST00000564994 RPA2P15927 270 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 PRSS3P35030 304 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 HERV-K104P61576 105 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 AADACL3Q5VUY0 350 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 CLEC19AQ6UXS0 136 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 LYSMD2Q8IV50 215 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 OR2K2Q8NGT1 345 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 MUC7Q8TAX7 377 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 AIFM2Q9BRQ8 373 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 FXYD6Q9H0Q3 95 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 PLEKHA2Q9HB19 425 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 VCX3AQ9NNX9 186 aa8.18□□□□□ -1.1
VPS39-208ENST00000564994 LYSTQ99698 3801 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 LGALS9O00182 355 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 DHFRP00374 187 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 RLN1P04808 185 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 FOLR2P14207 255 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 HLA-DMAP28067 261 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 HRH1P35367 487 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 ARL3P36405 182 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 VBP1P61758 197 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 HAGHQ16775 308 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 DEFB114Q30KQ6 69 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 ZNF585BQ52M93 769 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 FAM209BQ5JX69 171 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 CASC10Q5T4H9 136 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 GTSCR1Q86UQ5 136 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 GPHB5Q86YW7 130 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 DMBX1Q8NFW5 382 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 OR10W1Q8NGF6 305 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 OR5H2Q8NGV7 314 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 CD300LFQ8TDQ1 290 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 GPX8Q8TED1 209 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 FCAMRQ8WWV6 532 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 CACNG8Q8WXS5 425 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 EEF1AKMT3Q96AZ1 226 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 CITED4Q96RK1 184 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 EDA2RQ9HAV5 297 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 COMMD9Q9P000 198 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 COMMD3Q9UBI1 195 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 SELENOKQ9Y6D0 94 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 DNAH1Q9P2D7 4330 aa8.17□□□□□ -1.1
VPS39-208ENST00000564994 TEX50A0A1B0GTY4 177 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 TMEM213A2RRL7 107 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 FGF2P09038 288 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 CD7P09564 240 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 DEFA4P12838 97 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 HIST1H1BP16401 226 aaKnown RBP8.16□□□□□ -1.1
VPS39-208ENST00000564994 F2RP25116 425 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 TAS2R46P59540 309 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 WT1-ASQ06250 92 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 LINC00322Q6ZN03 302 aaPredicted RBP8.16□□□□□ -1.1
VPS39-208ENST00000564994 OR6F1Q8NGZ6 308 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 DYNLRB2Q8TF09 96 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 BORCS5Q969J3 196 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 NEURL2Q9BR09 285 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 COMMD5Q9GZQ3 224 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 WFDC10AQ9H1F0 79 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 PLEKHA3Q9HB20 300 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 ZC4H2Q9NQZ6 224 aa8.16□□□□□ -1.1
VPS39-208ENST00000564994 MARCH11A6NNE9 402 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 A8MWP6 167 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 GPR31O00270 319 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 HPGDSO60760 199 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 APOA1P02647 267 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 CLEC3BP05452 202 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 SMIM18P0DKX4 95 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 ELK1P19419 428 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 CBLN1P23435 193 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 LPAR6P43657 344 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 CD81P60033 236 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 UNQ9165/PRO28630Q6UXU0 137 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 SNX29P2Q8IUI4 249 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 LAX1Q8IWV1 398 aa8.15□□□□□ -1.1
VPS39-208ENST00000564994 ZNF502Q8TBZ5 544 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms