RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MED28Q9H204 178 aa7.62□□□□□ -1.19
CUX1-216ENST00000558469 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.62□□□□□ -1.19
CUX1-216ENST00000558469 CACNG5Q9UF02 275 aa7.62□□□□□ -1.19
CUX1-216ENST00000558469 A0A1B0GU03 582 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 C5orf51A6NDU8 294 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 LINC01548A6NM66 108 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 GOSR2O14653 212 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 ACTL6BO94805 426 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 SIX6O95475 246 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 OPN1MWP04001 364 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 SULT1A3P0DMM9 295 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 SULT1A4P0DMN0 295 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 OPN1MW2P0DN77 364 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 OPN1MW3P0DN78 364 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 MYOD1P15172 320 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 HLA-GP17693 338 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 MAS1LP35410 378 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 CX3CL1P78423 397 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 SMCO1Q147U7 214 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 FXYD3Q14802 87 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 ARSJQ5FYB0 599 aaPredicted RBP7.61□□□□□ -1.19
CUX1-216ENST00000558469 THOC7Q6I9Y2 204 aaKnown RBP7.61□□□□□ -1.19
CUX1-216ENST00000558469 ZNF562Q6V9R5 426 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 Q6ZS46 218 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 OR1S1Q8NH92 325 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 TAF15Q92804 592 aaKnown RBP eCLIP7.61□□□□□ -1.19
CUX1-216ENST00000558469 OR10C1Q96KK4 312 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 QTRT1Q9BXR0 403 aaKnown RBP7.61□□□□□ -1.19
CUX1-216ENST00000558469 PRSS22Q9GZN4 317 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 COMMD5Q9GZQ3 224 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 NPFFR1Q9GZQ6 430 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 TMEM14BQ9NUH8 114 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 FKBP11Q9NYL4 201 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 PRNDQ9UKY0 176 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 FOXA2Q9Y261 457 aaPredicted RBP7.61□□□□□ -1.19
CUX1-216ENST00000558469 OR51B2Q9Y5P1 312 aa7.61□□□□□ -1.19
CUX1-216ENST00000558469 hCG_2014768A0A024R1R8 64 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 IGHV7-81A0A0B4J1V7 117 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 TEX50A0A1B0GTY4 177 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 C15orf61A6NNL5 157 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 ST8SIA3O43173 380 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 NXPH3O95157 252 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 IGHG2P01859 326 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 SLC25A6P12236 298 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 COMPP49747 757 aaPredicted RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 RPL15P61313 204 aaKnown RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 RRAS2P62070 204 aaPredicted RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 SSBP2P81877 361 aaPredicted RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 FCN2Q15485 313 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 IAH1Q2TAA2 248 aaPredicted RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 GSG1LQ6UXU4 331 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 SLC35E3Q7Z769 313 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 FOXRED2Q8IWF2 684 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 GRPEL2Q8TAA5 225 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 ABHD5Q8WTS1 349 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 SPIN2AQ99865 258 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 SPIN2BQ9BPZ2 258 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 HINT2Q9BX68 163 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 PARP11Q9NR21 331 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 COA4Q9NYJ1 87 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 GSKIPQ9P0R6 139 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 MGAT4CQ9UBM8 478 aa7.6□□□□□ -1.19
CUX1-216ENST00000558469 SETD2Q9BYW2 2564 aaPredicted RBP7.6□□□□□ -1.19
CUX1-216ENST00000558469 A0A1B0GVG6 124 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 MSGN1A6NI15 193 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 E7EUB6 86 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 IFNA17P01571 189 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 FGF2P09038 288 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 APELAP0DMC3 54 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 CXCL3P19876 107 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 RPL27AP46776 148 aaKnown RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 H2BFSP57053 126 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 HSPE1P61604 102 aaKnown RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 NDPQ00604 133 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 SPINK9Q5DT21 86 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 C10orf55Q5SWW7 151 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 Q6ZSV7 163 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 ZNF429Q86V71 674 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 ZBTB8BQ8NAP8 495 aaPredicted RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 OR5M8Q8NGP6 311 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 OR1L8Q8NGR8 309 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 SRSF12Q8WXF0 261 aaKnown RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 ARPC1AQ92747 370 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 C2orf50Q96LR7 162 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 FYTTD1Q96QD9 318 aaKnown RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 FAM103A1Q9BTL3 118 aaKnown RBP7.59□□□□□ -1.19
CUX1-216ENST00000558469 PDCD10Q9BUL8 212 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 ZNF702PQ9H963 129 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 LINC00527Q9UJ94 153 aa7.59□□□□□ -1.19
CUX1-216ENST00000558469 CGB1A6NKQ9 187 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 ATP6V0E1O15342 81 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 KCNAB3O43448 404 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 PITX3O75364 302 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 SCGB1D2O95969 90 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 TRAPPC2P0DI81 140 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 TRAPPC2BP0DI82 140 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 EGR2P11161 476 aaPredicted RBP7.58□□□□□ -1.2
CUX1-216ENST00000558469 VDAC2P45880 294 aaPredicted RBP7.58□□□□□ -1.2
CUX1-216ENST00000558469 SPCS3P61009 180 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 TNFRSF9Q07011 255 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms