RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ST6GALNAC6Q969X2 333 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 HRASLS5Q96KN8 279 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 TMPRSS13Q9BYE2 586 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 OR2D2Q9H210 308 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 PLEKHA2Q9HB19 425 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 IGHA1P01876 353 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 CD24P25063 80 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 LPAR6P43657 344 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 KLRD1Q13241 179 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 LY6EQ16553 131 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 ANKRD55Q3KP44 614 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 SPIN3Q5JUX0 258 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM58AQ8N1B3 248 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 RFESDQ8TAC1 157 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 GHSRQ92847 366 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 ACTR3CQ9C0K3 210 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 NRN1Q9NPD7 142 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 INPP5EQ9NRR6 644 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 SERTAD4Q9NUC0 356 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 NPTNQ9Y639 398 aa6.55□□□□□ -1.36
LIMCH1-219ENST00000514096 J3QR89 54 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 OR5AC1P0C628 307 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 CD37P11049 281 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 PMCHP20382 165 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 DLK1P80370 383 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 DOC2BQ14184 412 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 BAGE3Q86Y29 109 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 BAGE2Q86Y30 109 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 ZDHHC23Q8IYP9 409 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 LHX4Q969G2 390 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 LYZL4Q96KX0 146 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 HSPB9Q9BQS6 159 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 ABHD14AQ9BUJ0 271 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNF665Q9H7R5 613 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 WFDC1Q9HC57 220 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 TMEM14AQ9Y6G1 99 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 PPIAL4CA0A0B4J2A2 164 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 NDUFB8O95169 186 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 PPIAL4GP0DN37 164 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 NANOS3P60323 173 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 RPL32P62910 135 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 GUCA2AQ02747 115 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 COL10A1Q03692 680 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 MLLT11Q13015 90 aaPredicted RBP6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 TPBGQ13641 420 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 TMEM69Q5SWH9 247 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 PNLDC1Q8NA58 520 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 MDFIQ99750 246 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 DCTN5Q9BTE1 182 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 PKIBQ9C010 78 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 OR5AC2Q9NZP5 309 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 RNF7Q9UBF6 113 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 LPAR3Q9UBY5 353 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 IGHV2-70DA0A0C4DH43 119 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 CRYGCP07315 174 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 MSMBP08118 114 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 BTCP35070 178 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 WNT4P56705 351 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 RAB11AP62491 216 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 TESK1Q15569 626 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 WDR82Q6UXN9 313 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 FAM90A1Q86YD7 464 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 CALHM1Q8IU99 346 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 OR4S2Q8NH73 311 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 RAB37Q96AX2 223 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 WNT10AQ9GZT5 417 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 TAF9BQ9HBM6 251 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 RAB18Q9NP72 206 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 METRNQ9UJH8 293 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 ST3GAL6Q9Y274 331 aa6.54□□□□□ -1.36
LIMCH1-219ENST00000514096 F8VVB4 439 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 F8VWA3 439 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 HLA-AP01891 365 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 SLC25A16P16260 332 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 SLC25A1P53007 311 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 HIST1H1AQ02539 215 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 ADIRFQ15847 76 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 C11orf87Q6NUJ2 197 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 ZNF439Q8NDP4 499 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 OR51A2Q8NGJ7 313 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 MOB3AQ96BX8 217 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 CDCA4Q9BXL8 241 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 NMNAT2Q9BZQ4 307 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 CR1P17927 2039 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 B4DSR2 109 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 XRCC2O43543 280 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 S1PR2O95136 353 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 GPR12P47775 334 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 NPBWR2P48146 333 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 C5orf64Q2M2E5 130 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 C5orf17Q8NAS9 161 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 OR8B3Q8NGG8 313 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 OR52E5Q8NH55 327 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 RNF183Q96D59 192 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 ADAT3Q96EY9 351 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 CYYR1Q96J86 154 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 OR8B2Q96RD0 313 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 RTL8AQ9BWD3 113 aa6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 QTRT1Q9BXR0 403 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-219ENST00000514096 KCNK15Q9H427 330 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms