RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CSN1S1P47710 185 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 EMX1Q04741 257 aaPredicted RBP0.87□□□□□ -2.27
VPS50-219ENST00000495039 MED21Q13503 144 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 CDK5R1Q15078 307 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 BATFQ16520 125 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 Q1T7F1 81 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 PDPK2PQ6A1A2 396 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 COMMD7Q86VX2 200 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 DYNAPQ8N1N2 210 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 SGMS2Q8NHU3 365 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TESCQ96BS2 214 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 ADAT1Q9BUB4 502 aaKnown RBP0.87□□□□□ -2.27
VPS50-219ENST00000495039 OR51I2Q9H344 312 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 MAP1LC3AQ9H492 121 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 MED9Q9NWA0 146 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 AK3Q9UIJ7 227 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TIMM22Q9Y584 194 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 PXMP4Q9Y6I8 212 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 COL6A6A6NMZ7 2263 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TENM3Q9P273 2699 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 FREM1Q5H8C1 2179 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 OR51F1A6NGY5 319 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 OR4C45A6NMZ5 311 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 LST1O00453 97 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 LEPROTO15243 131 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 APOEP02649 317 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 REG1AP05451 166 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 EVX1P49640 407 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 RSU1Q15404 277 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 NDUFA5Q16718 116 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 C1orf194Q5T5A4 169 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 FAM27BQ5VT28 67 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 DCXRQ7Z4W1 244 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 MNS1Q8NEH6 495 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 DRC3Q9H069 523 aa0.86□□□□□ -2.27
VPS50-219ENST00000495039 ABCC11Q96J66 1382 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 I3L521 148 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 GLI3P10071 1580 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 COX5BP10606 129 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 CCL1P22362 96 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 RPL12P30050 165 aaKnown RBP0.85□□□□□ -2.27
VPS50-219ENST00000495039 S100A7P31151 101 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 BLVRAP53004 296 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 OR4D2P58180 307 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 POLR2GP62487 172 aaKnown RBP eCLIP0.85□□□□□ -2.27
VPS50-219ENST00000495039 FABP9Q0Z7S8 132 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 COTL1Q14019 142 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 SURF2Q15527 256 aaPredicted RBP0.85□□□□□ -2.27
VPS50-219ENST00000495039 TNFAIP8L3Q5GJ75 292 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 IQCF2Q8IXL9 164 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 ZNF676Q8N7Q3 588 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 ANKRD7Q92527 254 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 HDHD2Q9H0R4 259 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 NKIRAS1Q9NYS0 192 aa0.85□□□□□ -2.27
VPS50-219ENST00000495039 RSL24D1Q9UHA3 163 aaKnown RBP0.85□□□□□ -2.27
VPS50-219ENST00000495039 MYOFQ9NZM1 2061 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 A0A0A6YYH2 397 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 A6NJ64 397 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 TRAPPC2LH3BP13 241 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 SDCBPO00560 298 aaPredicted RBP0.84□□□□□ -2.27
VPS50-219ENST00000495039 SLC22A1O15245 554 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 OCM2P0CE71 109 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 C8orf88P0DMB2 117 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 SULT1A3P0DMM9 295 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 SULT1A4P0DMN0 295 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 MYL12AP19105 171 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 HLA-DMBP28068 263 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 MAP2K4P45985 399 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 TNFAIP6P98066 277 aaPredicted RBP0.84□□□□□ -2.27
VPS50-219ENST00000495039 PLCXD2Q0VAA5 305 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 MLLT11Q13015 90 aaPredicted RBP0.84□□□□□ -2.27
VPS50-219ENST00000495039 OR1M1Q8NGA1 313 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 OR8B3Q8NGG8 313 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 PIGXQ8TBF5 258 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 DIRAS2Q96HU8 199 aa0.84□□□□□ -2.27
VPS50-219ENST00000495039 ERMAPQ96PL5 475 aaPredicted RBP0.84□□□□□ -2.27
VPS50-219ENST00000495039 PAQR5Q9NXK6 330 aaPredicted RBP0.84□□□□□ -2.27
VPS50-219ENST00000495039 BRWD1Q9NSI6 2320 aa0.84□□□□□ -2.28
VPS50-219ENST00000495039 DIDO1Q9BTC0 2240 aaKnown RBP0.83□□□□□ -2.28
VPS50-219ENST00000495039 IGKV2D-26A0A0A0MRZ7 120 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 TRBV10-2A0A0K0K1G8 114 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 IBA57-AS1B1ANH7 110 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 M0QZ92 97 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 NOS1APO75052 506 aaPredicted RBP0.83□□□□□ -2.28
VPS50-219ENST00000495039 KRT7P08729 469 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 SRP19P09132 144 aaKnown RBP0.83□□□□□ -2.28
VPS50-219ENST00000495039 UCHL3P15374 230 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 NFYAP23511 347 aaPredicted RBP0.83□□□□□ -2.28
VPS50-219ENST00000495039 REG1BP48304 166 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 CAV1Q03135 178 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 OGFRL1Q5TC84 451 aaPredicted RBP0.83□□□□□ -2.28
VPS50-219ENST00000495039 C1orf195Q5TG92 126 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 ZNF550Q7Z398 422 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 Q8N2B8 174 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 OR5B17Q8NGF7 314 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 DDI1Q8WTU0 396 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 ROPN1LQ96C74 230 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 ARL5BQ96KC2 179 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 OR8D2Q9GZM6 311 aa0.83□□□□□ -2.28
VPS50-219ENST00000495039 FAM96AQ9H5X1 160 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms