RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MYOD1P15172 320 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 ARL3P36405 182 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 TAS2R31P59538 309 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 FXYD4P59646 89 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 POU2AF1Q16633 256 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 ZFAND6Q6FIF0 208 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 CLEC19AQ6UXS0 136 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 LINC00322Q6ZN03 302 aaPredicted RBP12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 OR5AP2Q8NGF4 316 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 GIMAP1Q8WWP7 306 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 EEF1AKMT3Q96AZ1 226 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 HRASLSQ9HDD0 168 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 ZC4H2Q9NQZ6 224 aa12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 GAR1Q9NY12 217 aaKnown RBP12.51□□□□□ -0.41
CCDC28B-204ENST00000469003 IGLV11-55A0A075B6I3 123 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 XRCC3O43542 346 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 REG1AP05451 166 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 FCER2P06734 321 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 CD7P09564 240 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 NQO2P16083 231 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 EDN2P20800 178 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 OR2B8PP59922 312 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 ZNF818PQ6ZRF7 136 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 CROCCP3Q8IVE0 287 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 CEPT1Q9Y6K0 416 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 S4R3C0 116 aa12.5□□□□□ -0.41
CCDC28B-204ENST00000469003 LCE6AA0A183 80 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 MEIS3P1A6NDR6 274 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 UPK2O00526 184 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 DEFA4P12838 97 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 GUCA2BQ16661 112 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 FAM106AQ4KMX7 169 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 TMEM17Q86X19 198 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 CD300LFQ8TDQ1 290 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 BORCS5Q969J3 196 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 CXorf58Q96LI9 332 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 SRSF8Q9BRL6 282 aaKnown RBP12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 PLEKHA2Q9HB19 425 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 IFT46Q9NQC8 304 aa12.49□□□□□ -0.41
CCDC28B-204ENST00000469003 TRBV7-1A0A0A6YYK4 115 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 TRAV3A0A0B4J244 114 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 A8MWP6 167 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 FGF2P09038 288 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 CBLN1P23435 193 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 HERV-K104P61576 105 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 AADACL3Q5VUY0 350 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 DEFB125Q8N687 156 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 OR51H1Q8NH63 302 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 S100A16Q96FQ6 103 aaKnown RBP12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 COMMD5Q9GZQ3 224 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 HIPK2Q9H2X6 1198 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 TMEM140Q9NV12 185 aa12.48□□□□□ -0.41
CCDC28B-204ENST00000469003 IGLC7A0M8Q6 106 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 TMEM213A2RRL7 107 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 RBMY1BA6NDE4 496 aaKnown RBP12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 RBMY1EA6NEQ0 496 aaKnown RBP12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 MFSD2BA6NFX1 497 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 OR11H12B2RN74 326 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 S1PR2O95136 353 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 RBMY1DP0C7P1 496 aaKnown RBP12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 TGFBR1P36897 503 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 UBE2NLQ5JXB2 153 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 DHRS11Q6UWP2 260 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 DMBX1Q8NFW5 382 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 CACNG8Q8WXS5 425 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 WDR89Q96FK6 387 aaPredicted RBP12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 SRD5A3Q9H8P0 318 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 RETNQ9HD89 108 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 EHFQ9NZC4 300 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 COMMD9Q9P000 198 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 ANAPC10Q9UM13 185 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 STARD9Q9P2P6 4700 aa12.47□□□□□ -0.41
CCDC28B-204ENST00000469003 ZNF320A2RRD8 509 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 CLEC3BP05452 202 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 GNRHRP30968 328 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 ZNF57Q68EA5 555 aaPredicted RBP12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 THOC7Q6I9Y2 204 aaKnown RBP12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 ZNF502Q8TBZ5 544 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 MOB3AQ96BX8 217 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 QTRT1Q9BXR0 403 aaKnown RBP12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 WFDC10AQ9H1F0 79 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 THYN1Q9P016 225 aa12.46□□□□□ -0.41
CCDC28B-204ENST00000469003 NAT1P18440 290 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 RPS19P39019 145 aaKnown RBP12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 RFX2P48378 723 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 TAS2R20P59543 309 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 ERVK-16P61578 105 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 TMEM69Q5SWH9 247 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 SLC16A13Q7RTY0 426 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 TMEM61Q8N0U2 210 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 UXS1Q8NBZ7 420 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 YIPF6Q96EC8 236 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 ZNF2Q9BSG1 426 aaPredicted RBP12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 MLXQ9UH92 298 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 CSMD3Q7Z407 3707 aa12.45□□□□□ -0.42
CCDC28B-204ENST00000469003 CYB5BO43169 146 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 PGLYRP1O75594 196 aaPredicted RBP12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 F2RP25116 425 aa12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 PTBP1P26599 531 aaKnown RBP eCLIP12.44□□□□□ -0.42
CCDC28B-204ENST00000469003 GPR183P32249 361 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms