RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	SPIN2A	Q99865	258 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	SPIN2B	Q9BPZ2	258 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	FAM103A1	Q9BTL3	118 aa	Known RBP	10.36	□□□□□ -0.75
SF1-206	ENST00000413725	COMMD5	Q9GZQ3	224 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	ALX4	Q9H161	411 aa	Predicted RBP	10.36	□□□□□ -0.75
SF1-206	ENST00000413725	FKBP11	Q9NYL4	201 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	PRND	Q9UKY0	176 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	TENM1	Q9UKZ4	2725 aa		10.36	□□□□□ -0.75
SF1-206	ENST00000413725	TRAV3	A0A0B4J244	114 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	DUXB	A0A1W2PPF3	345 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	C9orf170	A2RU37	121 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	RBMXL2	O75526	392 aa	Known RBP	10.35	□□□□□ -0.75
SF1-206	ENST00000413725	IGKV1-5	P01602	117 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	OR9G9	P0C7N8	305 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	SSBP2	P81877	361 aa	Predicted RBP	10.35	□□□□□ -0.75
SF1-206	ENST00000413725	DHRS2	Q13268	280 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	DCTN2	Q13561	401 aa	Known RBP	10.35	□□□□□ -0.75
SF1-206	ENST00000413725	PLET1	Q6UQ28	207 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	UNQ5815/PRO19632	Q6UWF5	114 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	COMMD1	Q8N668	190 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	SLC35G3	Q8N808	338 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	DUSP18	Q8NEJ0	188 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	OR5AU1	Q8NGC0	362 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	OR4X2	Q8NGF9	303 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	COQ8A	Q8NI60	647 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	TMEM68	Q96MH6	324 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	PRR13	Q9NZ81	148 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	FBXO7	Q9Y3I1	522 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725	WSB1	Q9Y6I7	421 aa		10.35	□□□□□ -0.75
SF1-206	ENST00000413725		A0A0B4J2A0	478 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	MSGN1	A6NI15	193 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	C15orf61	A6NNL5	157 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725		G3V318	75 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	FBXO24	O75426	580 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	DUS4L	O95620	317 aa	Known RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	PTTG1	O95997	202 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	EGR2	P11161	476 aa	Predicted RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	MECP2	P51608	486 aa	Known RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	OR2B8P	P59922	312 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	AKIRIN2	Q53H80	203 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	C10orf55	Q5SWW7	151 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	THOC7	Q6I9Y2	204 aa	Known RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	TEX38	Q6PEX7	206 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	ZNF329	Q86UD4	541 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	LRTM2	Q8N967	370 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	LFNG	Q8NES3	379 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	OR1L8	Q8NGR8	309 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	WIPF2	Q8TF74	440 aa	Predicted RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	LSM10	Q969L4	123 aa	Known RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	FYTTD1	Q96QD9	318 aa	Known RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	ZNF747	Q9BV97	191 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	SHPK	Q9UHJ6	478 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	FOXA2	Q9Y261	457 aa	Predicted RBP	10.34	□□□□□ -0.75
SF1-206	ENST00000413725	NSG2	Q9Y328	171 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725	OR51B2	Q9Y5P1	312 aa		10.34	□□□□□ -0.75
SF1-206	ENST00000413725		A0A1W2PN81	502 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	OPN1MW	P04001	364 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725		P0C879	139 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	OPN1MW2	P0DN77	364 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	OPN1MW3	P0DN78	364 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	CHRNA7	P36544	502 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	ANKRD55	Q3KP44	614 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	OR5M8	Q8NGP6	311 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	OR5B3	Q8NH48	314 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	SPATA3	Q8NHX4	192 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	PDCD10	Q9BUL8	212 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725	QTRT1	Q9BXR0	403 aa	Known RBP	10.33	□□□□□ -0.76
SF1-206	ENST00000413725	TMEM14B	Q9NUH8	114 aa		10.33	□□□□□ -0.76
SF1-206	ENST00000413725		A0A0G2JRQ6	117 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	IGHG4	P01861	327 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	ELANE	P08246	267 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	TRAPPC2	P0DI81	140 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	TRAPPC2B	P0DI82	140 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	MYOD1	P15172	320 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	CFHR3	Q02985	330 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	FOXE3	Q13461	319 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	IZUMO4	Q1ZYL8	232 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	C19orf54	Q5BKX5	351 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	CXorf66	Q5JRM2	361 aa	Predicted RBP	10.32	□□□□□ -0.76
SF1-206	ENST00000413725	SHISA2	Q6UWI4	295 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	C10orf99	Q6UWK7	81 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	LYZL2	Q7Z4W2	148 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	ZNF429	Q86V71	674 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	MRPL41	Q8IXM3	137 aa	Known RBP	10.32	□□□□□ -0.76
SF1-206	ENST00000413725	MINDY2	Q8NBR6	621 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	SRSF8	Q9BRL6	282 aa	Known RBP	10.32	□□□□□ -0.76
SF1-206	ENST00000413725	HINT2	Q9BX68	163 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	GPN1	Q9HCN4	374 aa	Predicted RBP	10.32	□□□□□ -0.76
SF1-206	ENST00000413725	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	10.32	□□□□□ -0.76
SF1-206	ENST00000413725	CACFD1	Q9UGQ2	172 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	ZNF257	Q9Y2Q1	563 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	TMED3	Q9Y3Q3	217 aa		10.32	□□□□□ -0.76
SF1-206	ENST00000413725	TEX50	A0A1B0GTY4	177 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	HMX3	A6NHT5	357 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	INMT-MINDY4	F8WBC2	141 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	PRAF2	O60831	178 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	DHFR	P00374	187 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	IL5	P05113	134 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	APELA	P0DMC3	54 aa		10.31	□□□□□ -0.76
SF1-206	ENST00000413725	SULT1A3	P0DMM9	295 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms