RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TMEM170AQ8WVE7 144 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 ITLN1Q8WWA0 313 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 TMEM68Q96MH6 324 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 GNB2P62879 340 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 CCL8P80075 99 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 TNFAIP6P98066 277 aaPredicted RBP13.48□□□□□ -0.25
PCDH1-203ENST00000394536 TMEM183BQ1AE95 376 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 WDR86Q86TI4 376 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 STPG3Q8N7X2 389 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 DYNLRB1Q9NP97 96 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 SPRR3Q9UBC9 169 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 PFN1P07737 140 aaKnown RBP13.48□□□□□ -0.25
PCDH1-203ENST00000394536 SELLP14151 372 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 ORM2P19652 201 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 RND2P52198 227 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 TGIF2LYQ8IUE0 185 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 OCC1Q8TAD7 63 aa13.48□□□□□ -0.25
PCDH1-203ENST00000394536 VENTXO95231 258 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 OR4A8P0C604 315 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 CD82P27701 267 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 CASP6P55212 293 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 RANP62826 216 aaKnown RBP13.47□□□□□ -0.25
PCDH1-203ENST00000394536 TRAT1Q6PIZ9 186 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 Q6ZSR3 168 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 OR51B2Q9Y5P1 312 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 IGHV3-21A0A0B4J1V1 117 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 TRAV3A0A0B4J244 114 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 ZNF146Q15072 292 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 WDR82Q6UXN9 313 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 ZADH2Q8N4Q0 377 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 CCL17Q92583 94 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 ACP1P24666 158 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 GCHFRP30047 84 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 RAB7AP51149 207 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 BHLHA15Q7RTS1 189 aaPredicted RBP13.47□□□□□ -0.25
PCDH1-203ENST00000394536 PRDM13Q9H4Q3 707 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 CALYQ9NYX4 217 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 ZNF835Q9Y2P0 537 aa13.47□□□□□ -0.25
PCDH1-203ENST00000394536 IGFBP2P18065 325 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 UNQ6494/PRO21346Q6UXR6 183 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 LINC01551Q86U37 167 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 SSBP3Q9BWW4 388 aaPredicted RBP13.46□□□□□ -0.25
PCDH1-203ENST00000394536 TECRQ9NZ01 308 aaKnown RBP13.46□□□□□ -0.25
PCDH1-203ENST00000394536 C10orf142B7Z368 130 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 MPDU1O75352 247 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 IL6RP08887 468 aaPredicted RBP13.46□□□□□ -0.25
PCDH1-203ENST00000394536 RNFT1Q5M7Z0 435 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 Q6ZT83 130 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 MMD2Q8IY49 270 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 DEFB124Q8NES8 71 aa13.46□□□□□ -0.25
PCDH1-203ENST00000394536 IFNL4K9M1U5 179 aa13.46□□□□□ -0.26
PCDH1-203ENST00000394536 CA2P00918 260 aa13.46□□□□□ -0.26
PCDH1-203ENST00000394536 RNASEKQ6P5S7 137 aaKnown RBP13.46□□□□□ -0.26
PCDH1-203ENST00000394536 ODF3L1Q8IXM7 274 aa13.46□□□□□ -0.26
PCDH1-203ENST00000394536 COQ2Q96H96 371 aa13.46□□□□□ -0.26
PCDH1-203ENST00000394536 TRIP6Q15654 476 aaKnown RBP13.45□□□□□ -0.26
PCDH1-203ENST00000394536 ATOH7Q8N100 152 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 FDCSPQ8NFU4 85 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 NDUFAF3Q9BU61 184 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 SPAARA0A1B0GVQ0 90 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 TAS2R60P59551 318 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
PCDH1-203ENST00000394536 PRSS8Q16651 343 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 IL19Q9UHD0 177 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 WDR83OSQ9Y284 106 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 CREBBPQ92793 2442 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 DIRC3C9JPN6 131 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 MYOD1P15172 320 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 SPATA31B1PQ5VZV4 182 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 STARD4Q96DR4 205 aa13.45□□□□□ -0.26
PCDH1-203ENST00000394536 TRBV6-6A0A0A6YYG2 114 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 IQCF6A8MYZ5 107 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 MFAP2P55001 183 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 HARBI1Q96MB7 349 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 TMEM167BQ9NRX6 74 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 ADMP35318 185 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 LCN2P80188 198 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 NKX6-3A6NJ46 265 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 MLNRO43193 412 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 RAB4AP20338 218 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 HNRNPA3P51991 378 aaKnown RBP13.44□□□□□ -0.26
PCDH1-203ENST00000394536 CENPWQ5EE01 88 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 TREML4Q6UXN2 200 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 Q6ZN92 141 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 MIR17HGQ75NE6 70 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 TCTEX1D1Q8N7M0 179 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 SEPSECSQ9HD40 501 aaKnown RBP13.44□□□□□ -0.26
PCDH1-203ENST00000394536 REV3LO60673 3130 aa13.44□□□□□ -0.26
PCDH1-203ENST00000394536 SERF1AO75920 110 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 USF1P22415 310 aaPredicted RBP13.43□□□□□ -0.26
PCDH1-203ENST00000394536 DUTP33316 252 aaKnown RBP13.43□□□□□ -0.26
PCDH1-203ENST00000394536 PRR31Q5SQ13 230 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 NABP2Q9BQ15 211 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 LRP4O75096 1905 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 Q8NFD4 153 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 RNASE7Q9H1E1 156 aaKnown RBP13.43□□□□□ -0.26
PCDH1-203ENST00000394536 HES4Q9HCC6 221 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 ZNF124Q15973 351 aa13.43□□□□□ -0.26
PCDH1-203ENST00000394536 IGHV3-72A0A0B4J1Y9 119 aa13.42□□□□□ -0.26
PCDH1-203ENST00000394536 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms