RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SIGLEC9Q9Y336 463 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 RPS10-NUDT3A0A1W2PQS6 291 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 FAM90A26D6RGX4 464 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 DEDDO75618 318 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 SPDEFO95238 335 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 TNFRSF9Q07011 255 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 PJVKQ0ZLH3 352 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 PRSS54Q6PEW0 395 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 ZNF546Q86UE3 836 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 ZNF429Q86V71 674 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 THAP6Q8TBB0 222 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 SMR3AQ99954 134 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 FBXL15Q9H469 300 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 ZNF430Q9H8G1 570 aaPredicted RBP15.89■□□□□ 0.13
CLN3-205ENST00000359984 METTL1Q9UBP6 276 aaKnown RBP15.89■□□□□ 0.13
CLN3-205ENST00000359984 PRNDQ9UKY0 176 aa15.89■□□□□ 0.13
CLN3-205ENST00000359984 RRHO14718 337 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 NBR2O15453 112 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 NDUFA3O95167 84 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 PET100P0DJ07 73 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 MYOD1P15172 320 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 LRRC75BQ2VPJ9 315 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 TEX29Q8N6K0 151 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 ARL6Q9H0F7 186 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 UBQLN2Q9UHD9 624 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 CHST1O43916 411 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 RLN2P04090 185 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 LYL1P12980 280 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 RPL8P62917 257 aaKnown RBP15.88■□□□□ 0.13
CLN3-205ENST00000359984 RBKSQ9H477 322 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 OR51B2Q9Y5P1 312 aa15.88■□□□□ 0.13
CLN3-205ENST00000359984 LINC00862A6NCI5 91 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 WRBO00258 174 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 SYNGR2O43760 224 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 SSSCA1O60232 199 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 IFNA17P01571 189 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 ZNF345Q14585 488 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 PRSS8Q16651 343 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 CLLU1Q5K131 121 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 OR52E5Q8NH55 327 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 C11orf1Q9H5F2 150 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 KIAA1456Q9P272 454 aa15.87■□□□□ 0.13
CLN3-205ENST00000359984 ANKRD34BA5PLL1 514 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 RNF222A6NCQ9 220 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 AANATQ16613 207 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 SPINK9Q5DT21 86 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 PPP1R27Q86WC6 154 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 KCNRGQ8N5I3 272 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 CLCC1Q96S66 551 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 TNCP24821 2201 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 A0A0D9SG52 128 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 NCBP2LA6PVI3 153 aaKnown RBP15.86■□□□□ 0.13
CLN3-205ENST00000359984 H3BUX3 64 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 FCN1O00602 326 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 KCNAB3O43448 404 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 TMEM50AO95807 157 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 SPCS3P61009 180 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 HSPE1P61604 102 aaKnown RBP15.86■□□□□ 0.13
CLN3-205ENST00000359984 PLGLAQ15195 96 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 PDLIM3Q53GG5 364 aaPredicted RBP15.86■□□□□ 0.13
CLN3-205ENST00000359984 DCUN1D4Q92564 292 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 ZDHHC16Q969W1 377 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 TMUB1Q9BVT8 246 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 FKBP11Q9NYL4 201 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 TCF19Q9Y242 345 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 ZNF257Q9Y2Q1 563 aa15.86■□□□□ 0.13
CLN3-205ENST00000359984 SETXQ7Z333 2677 aaKnown RBP15.86■□□□□ 0.13
CLN3-205ENST00000359984 TEX50A0A1B0GTY4 177 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 MED6O75586 246 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 OR2F2O95006 317 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 LY6G6DO95868 133 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 OPN1MWP04001 364 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 OPN1MW2P0DN77 364 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 OPN1MW3P0DN78 364 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 IAPPP10997 89 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 OR2F1Q13607 317 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 C5orf64Q2M2E5 130 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 MMD2Q8IY49 270 aa15.85■□□□□ 0.13
CLN3-205ENST00000359984 E5RGE8 158 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 FGF2P09038 288 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 PAX9P55771 341 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 ZNF48Q96MX3 618 aaPredicted RBP15.84■□□□□ 0.13
CLN3-205ENST00000359984 C1RLQ9NZP8 487 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 CACFD1Q9UGQ2 172 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 MXRA5Q9NR99 2828 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 CEBPZOSA8MTT3 80 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 CD99P14209 185 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 SRP14P37108 136 aaKnown RBP15.84■□□□□ 0.13
CLN3-205ENST00000359984 C10orf55Q5SWW7 151 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 ACOT7LQ6ZUV0 252 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 TMEM219Q86XT9 240 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 Q8N9W7 124 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 OR5B3Q8NH48 314 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 DTD1Q8TEA8 209 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 RBM14Q96PK6 669 aaKnown RBP15.84■□□□□ 0.13
CLN3-205ENST00000359984 RAB40CQ96S21 281 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 COMMD5Q9GZQ3 224 aa15.84■□□□□ 0.13
CLN3-205ENST00000359984 A6NDX4 124 aa15.83■□□□□ 0.12
CLN3-205ENST00000359984 CYSRT1A8MQ03 144 aa15.83■□□□□ 0.12
CLN3-205ENST00000359984 E7EUB6 86 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms