RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TGFBR3LH3BV60 316 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 CA2P00918 260 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 SIGIRRQ6IA17 410 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 ARL17AQ8IVW1 177 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 MAP1LC3AQ9H492 121 aa13.19□□□□□ -0.3
PTPRF-201ENST00000359947 ACAA1P09110 424 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-201ENST00000359947 SEC11BP0C7V7 166 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 KLK2P20151 261 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 WFDC12Q8WWY7 111 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 TP53RKQ96S44 253 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 MRPS18AQ9NVS2 196 aaKnown RBP13.18□□□□□ -0.3
PTPRF-201ENST00000359947 LINC00527Q9UJ94 153 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 SBF2Q86WG5 1849 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF146Q15072 292 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 LINC00470Q9BZP3 86 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 DOCK6Q96HP0 2047 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 COMPP49747 757 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-201ENST00000359947 STHQ8IWL8 128 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 SH3BGRL3Q9H299 93 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 PTPRFP10586 1907 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 RRHO14718 337 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 CD1AP06126 327 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 COX19Q49B96 90 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 ASPHD2Q6ICH7 369 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 NPFFR1Q9GZQ6 430 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 TRAV40A0A0B4J280 105 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A10PA6NDY2 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A18PA6NE21 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A16PA6NEW6 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A20PA6NIJ5 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A8PA6NJQ4 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A7PA6NKC0 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A22PA8MWA6 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A12PA8MX19 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A5PA8MXJ8 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A23PA8MXZ1 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A15PP0C7V4 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A13PP0C7W8 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A14PP0C7W9 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM90A24PP0C7X0 464 aa13.18□□□□□ -0.3
PTPRF-201ENST00000359947 LGALS3P17931 250 aaKnown RBP13.18□□□□□ -0.3
PTPRF-201ENST00000359947 FAM74A7A6NL05 159 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 UNQ6494/PRO21346Q6UXR6 183 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 C1QL2Q7Z5L3 287 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 MRPL20Q9BYC9 149 aaKnown RBP13.17□□□□□ -0.3
PTPRF-201ENST00000359947 PRB4P10163 310 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-201ENST00000359947 ZIC4Q8N9L1 334 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 MSGN1A6NI15 193 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 CD59P13987 128 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF25P17030 456 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-201ENST00000359947 OR4A47Q6IF82 309 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 OR13A1Q8NGR1 328 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 NABP2Q9BQ15 211 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 TP53BP1Q12888 1972 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-201ENST00000359947 SIGLEC5O15389 551 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 THBDP07204 575 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 C9orf62Q8N4C0 152 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 C8orf46Q8TAG6 207 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 JMJD8Q96S16 334 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 SPRR3Q9UBC9 169 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 TMEM45BQ96B21 275 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 TNFRSF18Q9Y5U5 241 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 DIRC3C9JPN6 131 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 C10orf128Q5T292 105 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 TMEM101Q96IK0 257 aa13.17□□□□□ -0.3
PTPRF-201ENST00000359947 ACACAQ13085 2346 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 RAB9AP51151 201 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 GPR132Q9UNW8 380 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 GREB1Q4ZG55 1949 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 C7orf71A4D174 169 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 MESP1Q9BRJ9 268 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 ATG101Q9BSB4 218 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 IGHMP01871 453 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 A6NDN8 102 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 IGLV3-21P80748 117 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-201ENST00000359947 CLDND2Q8NHS1 167 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 RAB24Q969Q5 203 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 PEMTQ9UBM1 199 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 LHX2P50458 406 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 IMMP1LQ96LU5 166 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 KIR2DL4Q99706 377 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 CADP27708 2225 aa13.16□□□□□ -0.3
PTPRF-201ENST00000359947 RPLP1P05386 114 aaKnown RBP13.15□□□□□ -0.3
PTPRF-201ENST00000359947 ZXDCQ2QGD7 858 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-201ENST00000359947 DNLZQ5SXM8 178 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 RARRES2Q99969 163 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 C12orf77C9JDV5 145 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 TOMM7Q9P0U1 55 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 TRPM7Q96QT4 1865 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 TRBV20OR9-2A0A075B6H5 130 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 LDLRAD2Q5SZI1 272 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 C5orf66Q9H5L9 145 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 KIAA1644Q3SXP7 199 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 PRSS22Q9GZN4 317 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 TUBD1Q9UJT1 453 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF646O15015 1829 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-201ENST00000359947 IGKV3D-20A0A0C4DH25 116 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 ZNF383Q8NA42 475 aa13.15□□□□□ -0.3
PTPRF-201ENST00000359947 F11RQ9Y624 299 aaKnown RBP13.15□□□□□ -0.3
PTPRF-201ENST00000359947 NAT1P18440 290 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms