RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 MOB3AQ96BX8 217 aa13.45□□□□□ -0.26
HDDC3-201ENST00000330334 HRASLSQ9HDD0 168 aa13.45□□□□□ -0.26
HDDC3-201ENST00000330334 EHFQ9NZC4 300 aa13.45□□□□□ -0.26
HDDC3-201ENST00000330334 COMMD9Q9P000 198 aa13.45□□□□□ -0.26
HDDC3-201ENST00000330334 IGLV11-55A0A075B6I3 123 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 IZUMO1RA6ND01 250 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 MEIS3P1A6NDR6 274 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 NDUFB8O95169 186 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 FCER2P06734 321 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 PRSS3P35030 304 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 RFX2P48378 723 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 THOC7Q6I9Y2 204 aaKnown RBP13.44□□□□□ -0.26
HDDC3-201ENST00000330334 TMEM17Q86X19 198 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 EEF1AKMT3Q96AZ1 226 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 CXorf58Q96LI9 332 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 CITED4Q96RK1 184 aa13.44□□□□□ -0.26
HDDC3-201ENST00000330334 TECRQ9NZ01 308 aaKnown RBP13.44□□□□□ -0.26
HDDC3-201ENST00000330334 DNAH7Q8WXX0 4024 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 TRBV7-1A0A0A6YYK4 115 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 PPP5D1E7EU14 171 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 OR2C1O95371 312 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 DEFA4P12838 97 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 F2RP25116 425 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 LSM3P62310 102 aaKnown RBP13.43□□□□□ -0.26
HDDC3-201ENST00000330334 DEFB114Q30KQ6 69 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 CD300EQ496F6 205 aaPredicted RBP13.43□□□□□ -0.26
HDDC3-201ENST00000330334 AADACL3Q5VUY0 350 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 HSD17B13Q7Z5P4 300 aaPredicted RBP13.43□□□□□ -0.26
HDDC3-201ENST00000330334 OR51H1Q8NH63 302 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 CCDC140Q96MF4 163 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 COMMD5Q9GZQ3 224 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 TMEM140Q9NV12 185 aa13.43□□□□□ -0.26
HDDC3-201ENST00000330334 IGLC7A0M8Q6 106 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 C2orf70A6NJV1 201 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 PGLYRP1O75594 196 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-201ENST00000330334 APOA1P02647 267 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 FOLR2P14207 255 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 FAM106AQ4KMX7 169 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 C19orf35Q6ZS72 473 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 LYSMD2Q8IV50 215 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 CMTM1Q8IZ96 169 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 DMBX1Q8NFW5 382 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 OR5H2Q8NGV7 314 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 OR6F1Q8NGZ6 308 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 ZNF2Q9BSG1 426 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-201ENST00000330334 QTRT1Q9BXR0 403 aaKnown RBP13.42□□□□□ -0.26
HDDC3-201ENST00000330334 TUBA4BQ9H853 241 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 ZC4H2Q9NQZ6 224 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 THYN1Q9P016 225 aa13.42□□□□□ -0.26
HDDC3-201ENST00000330334 TRAV3A0A0B4J244 114 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 SMIM31A0A1B0GVY4 71 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 ZNF785A8K8V0 405 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 S1PR2O95136 353 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 HLA-AP01891 365 aaKnown RBP13.41□□□□□ -0.26
HDDC3-201ENST00000330334 PMP2P02689 132 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 MYOD1P15172 320 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 ARL3P36405 182 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 HAGHQ16775 308 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 CASC10Q5T4H9 136 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 CLEC19AQ6UXS0 136 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 GPX8Q8TED1 209 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 DGCR14Q96DF8 476 aaKnown RBP13.41□□□□□ -0.26
HDDC3-201ENST00000330334 SPATA25Q9BR10 227 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 FUNDC2Q9BWH2 189 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 SCPEP1Q9HB40 452 aa13.41□□□□□ -0.26
HDDC3-201ENST00000330334 FAM212BQ9NTI7 297 aaPredicted RBP13.41□□□□□ -0.26
HDDC3-201ENST00000330334 A8MWP6 167 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 CYB5BO43169 146 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 CLEC3BP05452 202 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 CBLN1P23435 193 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 PTBP1P26599 531 aaKnown RBP eCLIP13.4□□□□□ -0.26
HDDC3-201ENST00000330334 ERVK-16P61578 105 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 LPCAT3Q6P1A2 487 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 LINC00322Q6ZN03 302 aaPredicted RBP13.4□□□□□ -0.26
HDDC3-201ENST00000330334 DYNLRB2Q8TF09 96 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 SLC2A8Q9NY64 477 aa13.4□□□□□ -0.26
HDDC3-201ENST00000330334 MARCH11A6NNE9 402 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 GPR31O00270 319 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 RLN1P04808 185 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 REG1AP05451 166 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 EIF4EP06730 217 aaKnown RBP13.39□□□□□ -0.27
HDDC3-201ENST00000330334 TRAPPC2P0DI81 140 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 TRAPPC2BP0DI82 140 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 OR1L8Q8NGR8 309 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 VN1R17PQ8TDU5 208 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 ATP6V0BQ99437 205 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 NEURL2Q9BR09 285 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 COMMD3Q9UBI1 195 aa13.39□□□□□ -0.27
HDDC3-201ENST00000330334 TEX50A0A1B0GTY4 177 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 MFSD2BA6NFX1 497 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 TPPPO94811 219 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 IGHV3-23P01764 117 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 SERPINE2P07093 398 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 LYL1P12980 280 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 HRH1P35367 487 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 LPAR6P43657 344 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 CD81P60033 236 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 NCS1P62166 190 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 ZNF585BQ52M93 769 aa13.38□□□□□ -0.27
HDDC3-201ENST00000330334 GDPD1Q8N9F7 314 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms