RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 APELAP0DMC3 54 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 IL3RAP26951 378 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 OR4P4Q8NGL7 312 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 LURAP1Q96LR2 239 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 WDR83OSQ9Y284 106 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 YTHDF2Q9Y5A9 579 aaKnown RBP17.58■□□□□ 0.4
TRIM28-201ENST00000253024 TIMM9Q9Y5J7 89 aa17.58■□□□□ 0.4
TRIM28-201ENST00000253024 GFRA3O60609 400 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 MBP02144 154 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 IGKV1-16P04430 117 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 OR10J4P0C629 311 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 IGFBP2P18065 325 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 PITPNC1Q9UKF7 332 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 A0A087X0M5 115 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 A0A1B0GX30 115 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 ZNF729A6NN14 1252 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-201ENST00000253024 NUPR1O60356 82 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 HPRT1P00492 218 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 NDUFB7P17568 137 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 NUBP1P53384 320 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 DLX1P56177 255 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 AKAP6Q13023 2319 aa17.57■□□□□ 0.4
TRIM28-201ENST00000253024 IGHG3P01860 377 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 LOXL3P58215 753 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 RELBQ01201 579 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 ARSJQ5FYB0 599 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-201ENST00000253024 GGTLC1Q9BX51 225 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 CTDSP1Q9GZU7 261 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 MANBALQ9NQG1 85 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 SRRM5B3KS81 715 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 TMEM250H0YL14 139 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 HLA-DRB5Q30154 266 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 C14orf144Q96I85 54 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 TMEM242Q9NWH2 141 aa17.56■□□□□ 0.4
TRIM28-201ENST00000253024 CA2P00918 260 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 KITLGP21583 273 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 OR4A47Q6IF82 309 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 TMEM183AQ8IXX5 376 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 ADH4P08319 380 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 USF2Q15853 346 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-201ENST00000253024 OR10W1Q8NGF6 305 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 MRPL37Q9BZE1 423 aaKnown RBP17.55■□□□□ 0.4
TRIM28-201ENST00000253024 GCM1Q9NP62 436 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 SLC25A15Q9Y619 301 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 DCHS2Q6V1P9 2916 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 ELOA3CA0A087WX78 387 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-201ENST00000253024 CGAP01215 116 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 GZMBP10144 247 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 KLF3P57682 345 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-201ENST00000253024 FAM90A1Q86YD7 464 aa17.55■□□□□ 0.4
TRIM28-201ENST00000253024 MUC6Q6W4X9 2439 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 MGST3O14880 152 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 TMPRSS2O15393 492 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 CBLN1P23435 193 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 GUSBP1Q15486 140 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 NHLRC2Q8NBF2 726 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 OCC1Q8TAD7 63 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 TRAPPC1Q9Y5R8 145 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 PTPRBP23467 1997 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 ATRXP46100 2492 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 F6UZH7 168 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 J3QW42 95 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 WNT2P09544 360 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 TCL1AP56279 114 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 STPG3Q8N7X2 389 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 CACNA1BQ00975 2339 aa17.54■□□□□ 0.4
TRIM28-201ENST00000253024 IL6RP08887 468 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-201ENST00000253024 SPCS3P61009 180 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 MRPS11P82912 194 aaKnown RBP17.53■□□□□ 0.4
TRIM28-201ENST00000253024 MIR17HGQ75NE6 70 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 C1orf159Q96HA4 380 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 CENPVQ7Z7K6 275 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-201ENST00000253024 PRR7Q8TB68 274 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 ASCL3Q9NQ33 180 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 PLSCR4Q9NRQ2 329 aa17.53■□□□□ 0.4
TRIM28-201ENST00000253024 COL12A1Q99715 3063 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 OR4A8P0C604 315 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 RPL31P62899 125 aaKnown RBP17.52■□□□□ 0.4
TRIM28-201ENST00000253024 ENY2Q9NPA8 101 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 DDTP30046 118 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 VDAC2P45880 294 aaPredicted RBP17.52■□□□□ 0.4
TRIM28-201ENST00000253024 FXYD3Q14802 87 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 C17orf58Q2M2W7 97 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 TP53TG5Q9Y2B4 290 aa17.52■□□□□ 0.4
TRIM28-201ENST00000253024 MDFIC2A0A1B0GVS7 189 aa17.52■□□□□ 0.39
TRIM28-201ENST00000253024 SCGB1D1O95968 90 aa17.52■□□□□ 0.39
TRIM28-201ENST00000253024 NPY1RP25929 384 aa17.52■□□□□ 0.39
TRIM28-201ENST00000253024 SRRM4A7MD48 611 aaKnown RBP17.51■□□□□ 0.39
TRIM28-201ENST00000253024 IGLV1-44P01699 117 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 CCL3L1P16619 93 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 ZNF664Q8N3J9 261 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 SLC24A4Q8NFF2 622 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 TIMP3P35625 211 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 HTD2P86397 168 aa17.51■□□□□ 0.39
TRIM28-201ENST00000253024 TNFAIP6P98066 277 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-201ENST00000253024 TSTD3H0UI37 97 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 EFNB3Q15768 340 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 DOLPP1Q86YN1 238 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 OR7C2O60412 319 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 PSG5Q15238 335 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms