RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 ZNF367Q7RTV3 350 aa18.73■□□□□ 0.59
PTPRF-216ENST00000617451 NR2C2APQ86WQ0 139 aa18.73■□□□□ 0.59
PTPRF-216ENST00000617451 OR2A7Q96R45 310 aa18.73■□□□□ 0.59
PTPRF-216ENST00000617451 SLC2A9Q9NRM0 540 aa18.73■□□□□ 0.59
PTPRF-216ENST00000617451 NDUFB11Q9NX14 153 aa18.73■□□□□ 0.59
PTPRF-216ENST00000617451 IGKV1D-13A0A0B4J2D9 117 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 TRDV1A0A1B0GX56 115 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 KBTBD11O94819 623 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 IGKV1-13P0DP09 117 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 CBLN1P23435 193 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 RPL27AP46776 148 aaKnown RBP18.72■□□□□ 0.59
PTPRF-216ENST00000617451 HACD4Q5VWC8 232 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 PUSL1Q8N0Z8 303 aaKnown RBP18.72■□□□□ 0.59
PTPRF-216ENST00000617451 OR4S2Q8NH73 311 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 VSTM2AQ8TAG5 236 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 TMEM167AQ8TBQ9 72 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 FANCD2OSQ96PS1 177 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 DCSTAMPQ9H295 470 aa18.72■□□□□ 0.59
PTPRF-216ENST00000617451 A0A1B0GW64 132 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 DPPA5A6NC42 116 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 ANKRD65E5RJM6 399 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 CRYGCP07315 174 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 ZNF735P0CB33 412 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 EIF4EBP1Q13541 118 aaPredicted RBP18.71■□□□□ 0.59
PTPRF-216ENST00000617451 CACNG8Q8WXS5 425 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 CCDC140Q96MF4 163 aa18.71■□□□□ 0.59
PTPRF-216ENST00000617451 FYTTD1Q96QD9 318 aaKnown RBP18.71■□□□□ 0.59
PTPRF-216ENST00000617451 HSD17B10Q99714 261 aaKnown RBP18.71■□□□□ 0.59
PTPRF-216ENST00000617451 NDUFB8O95169 186 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 IGHV3-23P01764 117 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 MAS1LP35410 378 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 BRWD1-AS2P59051 145 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 KLK9Q2XQG4 91 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 CNIH2Q6PI25 160 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 CLEC19AQ6UXS0 136 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 SLC16A13Q7RTY0 426 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 KLK9Q9UKQ9 250 aa18.7■□□□□ 0.58
PTPRF-216ENST00000617451 TMEM213A2RRL7 107 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 GALP22466 123 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 ARL3P36405 182 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 TMEM61Q8N0U2 210 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 TCTEX1D2Q8WW35 142 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 SPATA2Q9UM82 520 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 SELENOKQ9Y6D0 94 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 S4R3C0 116 aa18.69■□□□□ 0.58
PTPRF-216ENST00000617451 A8MWP6 167 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 AREGP15514 252 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 PSMB6P28072 239 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 FAM106AQ4KMX7 169 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 ZNF57Q68EA5 555 aaPredicted RBP18.68■□□□□ 0.58
PTPRF-216ENST00000617451 C22orf42Q6IC83 251 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 MFSD4AQ8N468 514 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 NUDCD2Q8WVJ2 157 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 MLXQ9UH92 298 aa18.68■□□□□ 0.58
PTPRF-216ENST00000617451 ZNF320A2RRD8 509 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 DHFRP00374 187 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 CTRB1P17538 263 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 CTRB2Q6GPI1 263 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 EEF1AKMT3Q96AZ1 226 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 TAS2R8Q9NYW2 309 aa18.67■□□□□ 0.58
PTPRF-216ENST00000617451 SMIM30A4D0T7 59 aa18.66■□□□□ 0.58
PTPRF-216ENST00000617451 TMEM235A6NFC5 223 aa18.66■□□□□ 0.58
PTPRF-216ENST00000617451 ZNF66Q6ZN08 573 aa18.66■□□□□ 0.58
PTPRF-216ENST00000617451 UXS1Q8NBZ7 420 aa18.66■□□□□ 0.58
PTPRF-216ENST00000617451 ANXA10Q9UJ72 324 aa18.66■□□□□ 0.58
PTPRF-216ENST00000617451 SSX5O60225 188 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 HRASP01112 189 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 HIST1H1BP16401 226 aaKnown RBP18.65■□□□□ 0.58
PTPRF-216ENST00000617451 RPL8P62917 257 aaKnown RBP18.65■□□□□ 0.58
PTPRF-216ENST00000617451 OR4A47Q6IF82 309 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 OR52B4Q8NGK2 314 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 GPHA2Q96T91 129 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 OVOL2Q9BRP0 275 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 GGTLC1Q9BX51 225 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 BLOC1S6Q9UL45 172 aa18.65■□□□□ 0.58
PTPRF-216ENST00000617451 NOTOA8MTQ0 251 aa18.64■□□□□ 0.57
PTPRF-216ENST00000617451 MYOD1P15172 320 aa18.64■□□□□ 0.57
PTPRF-216ENST00000617451 GNG2P59768 71 aa18.64■□□□□ 0.57
PTPRF-216ENST00000617451 SSX9Q7RTT3 188 aa18.64■□□□□ 0.57
PTPRF-216ENST00000617451 IGLV11-55A0A075B6I3 123 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 TRBV7-1A0A0A6YYK4 115 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 CGB1A6NKQ9 187 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 SCGNO76038 276 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 SCAF4O95104 1147 aaKnown RBP18.63■□□□□ 0.57
PTPRF-216ENST00000617451 REG1AP05451 166 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 CLEC3BP05452 202 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 DEFA4P12838 97 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 HLA-GP17693 338 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 ANKRD55Q3KP44 614 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 BET1LQ9NYM9 111 aa18.63■□□□□ 0.57
PTPRF-216ENST00000617451 LOC102724200A0A096LPH7 203 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-216ENST00000617451 MFSD2BA6NFX1 497 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 TM4SF20Q53R12 229 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 BTNL8Q6UX41 500 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 UNQ9165/PRO28630Q6UXU0 137 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 OR4A5Q8NH83 315 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 CXorf58Q96LI9 332 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 CNBD2Q96M20 576 aa18.62■□□□□ 0.57
PTPRF-216ENST00000617451 C8orf88P0DMB2 117 aa18.61■□□□□ 0.57
PTPRF-216ENST00000617451 FGF9P31371 208 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms