RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MEF2DQ14814 521 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 C19orf54Q5BKX5 351 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 SAMD5Q5TGI4 173 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 C18orf65Q6ZTR6 163 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 SSX9Q7RTT3 188 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 C1QL4Q86Z23 238 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 LINC00482Q8N8I6 264 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 OR5T1Q8NG75 326 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 OR11H1Q8NG94 326 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 TMEM167AQ8TBQ9 72 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 MYOZ3Q8TDC0 251 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 MS4A10Q96PG2 267 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 GPHA2Q96T91 129 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 COA4Q9NYJ1 87 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 BET1LQ9NYM9 111 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 COMMD9Q9P000 198 aa15.09■□□□□ 0.01
UPF1-212ENST00000601689 VWFP04275 2813 aa15.08■□□□□ 0.01
UPF1-212ENST00000601689 M0QYG6 137 aa15.08■□□□□ 0
UPF1-212ENST00000601689 RAB3DO95716 219 aa15.08■□□□□ 0
UPF1-212ENST00000601689 CD3DP04234 171 aa15.08■□□□□ 0
UPF1-212ENST00000601689 ECI1P42126 302 aa15.08■□□□□ 0
UPF1-212ENST00000601689 RUNX1Q01196 453 aa15.08■□□□□ 0
UPF1-212ENST00000601689 OXLD1Q5BKU9 147 aa15.08■□□□□ 0
UPF1-212ENST00000601689 STEAP1BQ6NZ63 245 aa15.08■□□□□ 0
UPF1-212ENST00000601689 VKORC1L1Q8N0U8 176 aa15.08■□□□□ 0
UPF1-212ENST00000601689 OR1N2Q8NGR9 330 aa15.08■□□□□ 0
UPF1-212ENST00000601689 SMIM4Q8WVI0 70 aa15.08■□□□□ 0
UPF1-212ENST00000601689 DGCR14Q96DF8 476 aaKnown RBP15.08■□□□□ 0
UPF1-212ENST00000601689 ZNF486Q96H40 463 aaPredicted RBP15.08■□□□□ 0
UPF1-212ENST00000601689 RAX2Q96IS3 184 aa15.08■□□□□ 0
UPF1-212ENST00000601689 P2RX4Q99571 388 aa15.08■□□□□ 0
UPF1-212ENST00000601689 FXYD6Q9H0Q3 95 aa15.08■□□□□ 0
UPF1-212ENST00000601689 TNCP24821 2201 aa15.08■□□□□ 0
UPF1-212ENST00000601689 DISC1C4P0D8 188 aa15.07■□□□□ 0
UPF1-212ENST00000601689 RAMP3O60896 148 aa15.07■□□□□ 0
UPF1-212ENST00000601689 DHFRP00374 187 aa15.07■□□□□ 0
UPF1-212ENST00000601689 OR9G9P0C7N8 305 aa15.07■□□□□ 0
UPF1-212ENST00000601689 IGLL1P15814 213 aa15.07■□□□□ 0
UPF1-212ENST00000601689 RPL27AP46776 148 aaKnown RBP15.07■□□□□ 0
UPF1-212ENST00000601689 RPL8P62917 257 aaKnown RBP15.07■□□□□ 0
UPF1-212ENST00000601689 ZNF616Q08AN1 781 aa15.07■□□□□ 0
UPF1-212ENST00000601689 PHLDA2Q53GA4 152 aa15.07■□□□□ 0
UPF1-212ENST00000601689 REC114Q7Z4M0 266 aa15.07■□□□□ 0
UPF1-212ENST00000601689 PUSL1Q8N0Z8 303 aaKnown RBP15.07■□□□□ 0
UPF1-212ENST00000601689 ZFAND1Q8TCF1 268 aa15.07■□□□□ 0
UPF1-212ENST00000601689 DUX3Q96PT4 197 aa15.07■□□□□ 0
UPF1-212ENST00000601689 OR5B12Q96R08 314 aa15.07■□□□□ 0
UPF1-212ENST00000601689 RSRP1Q9BUV0 290 aa15.07■□□□□ 0
UPF1-212ENST00000601689 FAM212BQ9NTI7 297 aaPredicted RBP15.07■□□□□ 0
UPF1-212ENST00000601689 NDUFA13Q9P0J0 144 aa15.07■□□□□ 0
UPF1-212ENST00000601689 SOX15O60248 233 aa15.06■□□□□ 0
UPF1-212ENST00000601689 DGCR2P98153 550 aa15.06■□□□□ 0
UPF1-212ENST00000601689 DEFB136Q30KP8 78 aa15.06■□□□□ 0
UPF1-212ENST00000601689 SCGB2B2Q4G0G5 96 aa15.06■□□□□ 0
UPF1-212ENST00000601689 OR4A47Q6IF82 309 aa15.06■□□□□ 0
UPF1-212ENST00000601689 ETV3LQ6ZN32 361 aa15.06■□□□□ 0
UPF1-212ENST00000601689 CCDC71LQ8N9Z2 235 aa15.06■□□□□ 0
UPF1-212ENST00000601689 USMG5Q96IX5 58 aa15.06■□□□□ 0
UPF1-212ENST00000601689 FYTTD1Q96QD9 318 aaKnown RBP15.06■□□□□ 0
UPF1-212ENST00000601689 TINAGL1Q9GZM7 467 aaPredicted RBP15.06■□□□□ 0
UPF1-212ENST00000601689 COMMD5Q9GZQ3 224 aa15.06■□□□□ 0
UPF1-212ENST00000601689 GNB4Q9HAV0 340 aa15.06■□□□□ 0
UPF1-212ENST00000601689 SNAPC5O75971 98 aa15.05■□□□□ -0
UPF1-212ENST00000601689 BRI3O95415 125 aa15.05■□□□□ -0
UPF1-212ENST00000601689 LGALS1P09382 135 aaKnown RBP15.05■□□□□ -0
UPF1-212ENST00000601689 AKAIN1P0CW23 69 aa15.05■□□□□ -0
UPF1-212ENST00000601689 HLA-GP17693 338 aa15.05■□□□□ -0
UPF1-212ENST00000601689 TNFSF8P32971 234 aa15.05■□□□□ -0
UPF1-212ENST00000601689 BRWD1-AS2P59051 145 aa15.05■□□□□ -0
UPF1-212ENST00000601689 POU2AF1Q16633 256 aa15.05■□□□□ -0
UPF1-212ENST00000601689 TERB2Q8NHR7 220 aa15.05■□□□□ -0
UPF1-212ENST00000601689 CASTOR1Q8WTX7 329 aa15.05■□□□□ -0
UPF1-212ENST00000601689 NXF2Q9GZY0 626 aaKnown RBP15.05■□□□□ -0
UPF1-212ENST00000601689 NOTCH3Q9UM47 2321 aa15.05■□□□□ -0
UPF1-212ENST00000601689 LINC01619G3V211 115 aa15.04■□□□□ -0
UPF1-212ENST00000601689 I3L521 148 aa15.04■□□□□ -0
UPF1-212ENST00000601689 CYB5BO43169 146 aa15.04■□□□□ -0
UPF1-212ENST00000601689 ATG12O94817 140 aa15.04■□□□□ -0
UPF1-212ENST00000601689 CD74P04233 296 aa15.04■□□□□ -0
UPF1-212ENST00000601689 HSPB1P04792 205 aaKnown RBP15.04■□□□□ -0
UPF1-212ENST00000601689 SERPINE2P07093 398 aa15.04■□□□□ -0
UPF1-212ENST00000601689 FGF2P09038 288 aa15.04■□□□□ -0
UPF1-212ENST00000601689 APELAP0DMC3 54 aa15.04■□□□□ -0
UPF1-212ENST00000601689 LPAR6P43657 344 aa15.04■□□□□ -0
UPF1-212ENST00000601689 BEAN1Q3B7T3 259 aa15.04■□□□□ -0
UPF1-212ENST00000601689 TBC1D26Q86UD7 250 aa15.04■□□□□ -0
UPF1-212ENST00000601689 TSC22D3Q99576 134 aa15.04■□□□□ -0
UPF1-212ENST00000601689 SLC2A9Q9NRM0 540 aa15.04■□□□□ -0
UPF1-212ENST00000601689 TMEM140Q9NV12 185 aa15.04■□□□□ -0
UPF1-212ENST00000601689 COPZ2Q9P299 210 aa15.04■□□□□ -0
UPF1-212ENST00000601689 MARCH11A6NNE9 402 aa15.03■□□□□ -0
UPF1-212ENST00000601689 GSTZ1O43708 216 aaPredicted RBP15.03■□□□□ -0
UPF1-212ENST00000601689 S1PR2O95136 353 aa15.03■□□□□ -0
UPF1-212ENST00000601689 IGHV3-11P01762 117 aa15.03■□□□□ -0
UPF1-212ENST00000601689 FAUP35544 74 aaKnown RBP15.03■□□□□ -0
UPF1-212ENST00000601689 SSBP2P81877 361 aaPredicted RBP15.03■□□□□ -0
UPF1-212ENST00000601689 KIAA0141Q14154 515 aaPredicted RBP15.03■□□□□ -0
UPF1-212ENST00000601689 FAM209BQ5JX69 171 aa15.03■□□□□ -0
UPF1-212ENST00000601689 C9orf66Q5T8R8 295 aa15.03■□□□□ -0
UPF1-212ENST00000601689 THOC7Q6I9Y2 204 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms