RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PLCXD1Q9NUJ7 323 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 MGAT4AQ9UM21 535 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 IGHV3OR16-8A0A075B7F1 116 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 LOC102724200A0A096LPH7 203 aaPredicted RBP6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 IGKV1D-13A0A0B4J2D9 117 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 ACTL6BO94805 426 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 S1PR2O95136 353 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 IGKV1-13P0DP09 117 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 NFYAP23511 347 aaPredicted RBP6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 MAP2K4P45985 399 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 SERPINB10P48595 397 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 FABP5Q01469 135 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 CDK10Q15131 360 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 RCN1Q15293 331 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 KCTD9Q7L273 389 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 LYG2Q86SG7 212 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 H1FOOQ8IZA3 346 aaPredicted RBP6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 UFD1Q92890 307 aa6.43□□□□□ -1.38
SHKBP1-220ENST00000599716 DPPA5A6NC42 116 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 CGB1A6NKQ9 187 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 MFNGO00587 321 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 IGLV2-14P01704 120 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 PTHLHP12272 177 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 RPA2P15927 270 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 RPL35AP18077 110 aaKnown RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 GPR183P32249 361 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 RPL27AP46776 148 aaKnown RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 BRWD1-AS2P59051 145 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 MRPS15P82914 257 aaKnown RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 IRF3Q14653 427 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF124Q15973 351 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF585BQ52M93 769 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 CEMP1Q6PRD7 247 aaPredicted RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 MMD2Q8IY49 270 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 C10orf67Q8IYJ2 551 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 OR10R2Q8NGX6 335 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 OSR1Q8TAX0 266 aaPredicted RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 SPIN2AQ99865 258 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 SPIN2BQ9BPZ2 258 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 TECRQ9NZ01 308 aaKnown RBP6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 SPATA2Q9UM82 520 aa6.42□□□□□ -1.38
SHKBP1-220ENST00000599716 MYCBP2O75592 4640 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 IGHV3-21A0A0B4J1V1 117 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 TRAV3A0A0B4J244 114 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 NUPR2A6NF83 97 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 LGALS9O00182 355 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 TNFSF12O43508 249 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF207O43670 478 aaKnown RBP6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 CLEC3BP05452 202 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 FCER2P06734 321 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 RRASP10301 218 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 HIST1H1DP16402 221 aaKnown RBP6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 CRHBPP24387 322 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 FCGR2BP31994 310 aaPredicted RBP6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 ARFRP1Q13795 201 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 PACRGLQ8N7B6 248 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 TCTEX1D2Q8WW35 142 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 OR51E2Q9H255 320 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 TAS2R8Q9NYW2 309 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF257Q9Y2Q1 563 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 V9GY05 133 aa6.41□□□□□ -1.38
SHKBP1-220ENST00000599716 DNAH17Q9UFH2 4485 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 SPRY2O43597 315 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 KBTBD11O94819 623 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 PSMB6P28072 239 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 TALDO1P37837 337 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 OGFRL1Q5TC84 451 aaPredicted RBP6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 NR2C2APQ86WQ0 139 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 GPHB5Q86YW7 130 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF645Q8N7E2 425 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 OR1L6Q8NGR2 347 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 OR5B3Q8NH48 314 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 NUDCD2Q8WVJ2 157 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 EEF1AKMT3Q96AZ1 226 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 ADTRPQ96IZ2 230 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 OR2A7Q96R45 310 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 CCDC90BQ9GZT6 254 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 SLC2A9Q9NRM0 540 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 RAB22AQ9UL26 194 aa6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 RBMX2Q9Y388 322 aaKnown RBP6.4□□□□□ -1.38
SHKBP1-220ENST00000599716 APOBP04114 4563 aaKnown RBP6.4□□□□□ -1.39
SHKBP1-220ENST00000599716 IGLV11-55A0A075B6I3 123 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 NPIPB5A8MRT5 1133 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 A8MWP6 167 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 ANKRD65E5RJM6 399 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 DEFB4AO15263 64 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 ARL6IP5O75915 188 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 ZNF735P0CB33 412 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 DEFA4P12838 97 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 CTRB1P17538 263 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 PSMD7P51665 324 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 NANOS2P60321 138 aaKnown RBP6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 EIF4EBP1Q13541 118 aaPredicted RBP6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 TPBGQ13641 420 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 ODF3L2Q3SX64 289 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 FAM106AQ4KMX7 169 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 CTRB2Q6GPI1 263 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 RBPMS2Q6ZRY4 209 aaKnown RBP6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 SLC25A42Q86VD7 318 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 APRG1Q8IVJ8 170 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms