RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SGMS2Q8NHU3 365 aa13.06□□□□□ -0.32
SHKBP1-219ENST00000599575 ARPC1AQ92747 370 aa13.06□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM222Q9H0R3 208 aa13.06□□□□□ -0.32
SHKBP1-219ENST00000599575 VSIG4Q9Y279 399 aa13.06□□□□□ -0.32
SHKBP1-219ENST00000599575 PSMB11A5LHX3 300 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 HAX1O00165 279 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 CNIH1O95406 144 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 CDS2O95674 445 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 RPL8P62917 257 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 FXYD3Q14802 87 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 OR4A47Q6IF82 309 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 CENPSQ8N2Z9 138 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 OR4X2Q8NGF9 303 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 IL22RA2Q969J5 263 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 RBMXL1Q96E39 390 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 TP53RKQ96S44 253 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 SPIN2AQ99865 258 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 CITED1Q99966 193 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 SPIN2BQ9BPZ2 258 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 ZNF430Q9H8G1 570 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 FKBP11Q9NYL4 201 aa13.05□□□□□ -0.32
SHKBP1-219ENST00000599575 ATP6V0E1O15342 81 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 KRASP01116 189 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 SLC6A1P30531 599 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM95Q3KNT9 176 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 THOC7Q6I9Y2 204 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 TEX38Q6PEX7 206 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 FAM219AQ8IW50 185 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 OR5AU1Q8NGC0 362 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 SEC22AQ96IW7 307 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 CLCC1Q96S66 551 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 PARP11Q9NR21 331 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 TPSG1Q9NRR2 321 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM140Q9NV12 185 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 NUBP2Q9Y5Y2 271 aa13.04□□□□□ -0.32
SHKBP1-219ENST00000599575 TRAV41A0A0B4J266 112 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 LINC00854A0A1B0GVQ3 168 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 LINC01548A6NM66 108 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 UPK2O00526 184 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 SNAPC5O75971 98 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 IGHG4P01861 327 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 ELANEP08246 267 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 AKR1C4P17516 323 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 BTCP35070 178 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 CCR6P51684 374 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 DEFA1P59665 94 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 DEFA3P59666 94 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 CFHR3Q02985 330 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 PJVKQ0ZLH3 352 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 MRGPRG-AS1Q2M3A8 158 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 TRIM16LQ309B1 348 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 SLC25A42Q86VD7 318 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 VKORC1L1Q8N0U8 176 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 MINDY2Q8NBR6 621 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 GLYATL2Q8WU03 294 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 RBPMSQ93062 196 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM230Q96A57 120 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM56Q96MV1 263 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 SRSF8Q9BRL6 282 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 ALX4Q9H161 411 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 CACFD1Q9UGQ2 172 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 PRNDQ9UKY0 176 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 TMEM56-RWDD3S4R434 201 aa13.03□□□□□ -0.32
SHKBP1-219ENST00000599575 FBXO24O75426 580 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 BRI3O95415 125 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 OPN1MWP04001 364 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 OR5AC1P0C628 307 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 OPN1MW2P0DN77 364 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 OPN1MW3P0DN78 364 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 HLA-GP17693 338 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 PPIFP30405 207 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 SSBP2P81877 361 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 FOXE3Q13461 319 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 TNXAQ16473 311 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 SSX9Q7RTT3 188 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 H2BFWTQ7Z2G1 175 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 HSD17B13Q7Z5P4 300 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 TMED4Q7Z7H5 227 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 RNF152Q8N8N0 203 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 ADAD2Q8NCV1 583 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 OR5M8Q8NGP6 311 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 ABHD5Q8WTS1 349 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 SRSF12Q8WXF0 261 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 RRNAD1Q96FB5 475 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 NOL4LQ96MY1 436 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 COMMD5Q9GZQ3 224 aa13.02□□□□□ -0.33
SHKBP1-219ENST00000599575 FAM240BA0A1B0GVZ2 78 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 DUXBA0A1W2PPF3 345 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 H3BUA1 57 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 ARPC1BO15143 372 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 IGKV1-39P01597 117 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 IGKV1D-39P04432 117 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 EGR2P11161 476 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 G6PCP35575 357 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 GNB1P62873 340 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 SUPT4H1P63272 117 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 NDPQ00604 133 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 CD83Q01151 205 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 SP6Q3SY56 376 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 C19orf54Q5BKX5 351 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms