RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 OR4A5Q8NH83 315 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 ST6GALNAC5Q9BVH7 336 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 YTHDF1Q9BYJ9 559 aaKnown RBP10.31□□□□□ -0.76
TRIM28-211ENST00000597968 SLC2A9Q9NRM0 540 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 DAPK2Q9UIK4 370 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 CEPT1Q9Y6K0 416 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 DPPA5A6NC42 116 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 RBFOX2O43251 390 aaKnown RBP eCLIP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 IGLV2-14P01704 120 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 APELAP0DMC3 54 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 SDC2P34741 201 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 RPL27AP46776 148 aaKnown RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 CD81P60033 236 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 MXD1Q05195 221 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 EIF4EBP1Q13541 118 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 DEFB114Q30KQ6 69 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 CD300EQ496F6 205 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 OR4A47Q6IF82 309 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 MFSD4AQ8N468 514 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 DYNLRB2Q8TF09 96 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 FYTTD1Q96QD9 318 aaKnown RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 NEURL2Q9BR09 285 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 SRSF8Q9BRL6 282 aaKnown RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 Q9H521 79 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 SSR3Q9UNL2 185 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 RRP15Q9Y3B9 282 aaKnown RBP10.3□□□□□ -0.76
TRIM28-211ENST00000597968 DMRT1Q9Y5R6 373 aa10.3□□□□□ -0.76
TRIM28-211ENST00000597968 TMEM235A6NFC5 223 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 A8MWP6 167 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 TEX22C9J3V5 150 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 NFYAP23511 347 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-211ENST00000597968 ARPC4P59998 168 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 FAM106AQ4KMX7 169 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 ZNF773Q6PK81 442 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 LGALS14Q8TCE9 139 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 NUDCD2Q8WVJ2 157 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 TCTEX1D2Q8WW35 142 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 BORCS5Q969J3 196 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 CXorf58Q96LI9 332 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 HIPK2Q9H2X6 1198 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 BET1LQ9NYM9 111 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 ADAM30Q9UKF2 790 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 ETV7Q9Y603 341 aa10.29□□□□□ -0.76
TRIM28-211ENST00000597968 TENM2Q9NT68 2774 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 TRBV7-1A0A0A6YYK4 115 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 IZUMO1RA6ND01 250 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 C2orf70A6NJV1 201 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 ZNF785A8K8V0 405 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 OR2J3O76001 311 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 FOLR2P14207 255 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 CTRB1P17538 263 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 PSMB6P28072 239 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 RPL30P62888 115 aaKnown RBP10.28□□□□□ -0.76
TRIM28-211ENST00000597968 RPL8P62917 257 aaKnown RBP10.28□□□□□ -0.76
TRIM28-211ENST00000597968 NEDD8Q15843 81 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 ANKRD55Q3KP44 614 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 CTRB2Q6GPI1 263 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 THOC7Q6I9Y2 204 aaKnown RBP10.28□□□□□ -0.76
TRIM28-211ENST00000597968 SFXN4Q6P4A7 337 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 SLC16A13Q7RTY0 426 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 OR5H6Q8NGV6 325 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 MARC2Q969Z3 335 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 EEF1AKMT3Q96AZ1 226 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 THYN1Q9P016 225 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 FBXL7Q9UJT9 491 aa10.28□□□□□ -0.76
TRIM28-211ENST00000597968 TRAV25A0A0B4J276 109 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 IGKV1D-13A0A0B4J2D9 117 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 LOC100506127A0A0U1RQW1 187 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 OR11H12B2RN74 326 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 CYB5BO43169 146 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 SSX5O60225 188 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 JTBO76095 146 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 PRH1P02810 166 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 IL6RP08887 468 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-211ENST00000597968 IGKV1-13P0DP09 117 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 ELLP55199 621 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-211ENST00000597968 TAS2R31P59538 309 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 DEFA5Q01523 94 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 CATR1Q13166 79 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 POU2AF1Q16633 256 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 C10orf55Q5SWW7 151 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 ZFAND6Q6FIF0 208 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 ADAMTSL5Q6ZMM2 481 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 HSD17B13Q7Z5P4 300 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-211ENST00000597968 CADM3Q8N126 398 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 CD300LFQ8TDQ1 290 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 FANCD2OSQ96PS1 177 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 ATP6V0BQ99437 205 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 RHBDL2Q9NX52 303 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 SPATA2Q9UM82 520 aa10.27□□□□□ -0.77
TRIM28-211ENST00000597968 HPRT1P00492 218 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 FCER2P06734 321 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 PTHLHP12272 177 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 DEFA4P12838 97 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 HLA-GP17693 338 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 CBLN1P23435 193 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 ARL3P36405 182 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 CBX5P45973 191 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 BRWD1-AS2P59051 145 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 IDNKQ5T6J7 187 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms