RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR2J3O76001 311 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 KBTBD11O94819 623 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 MAS1LP35410 378 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 OR2B11Q5JQS5 317 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 TPRA1Q86W33 373 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 VSTM2AQ8TAG5 236 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 NEURL2Q9BR09 285 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 HIPK2Q9H2X6 1198 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 ZC4H2Q9NQZ6 224 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 SLC2A9Q9NRM0 540 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 ANXA10Q9UJ72 324 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 CEPT1Q9Y6K0 416 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 C2orf70A6NJV1 201 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 PPP5D1E7EU14 171 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 GGCTO75223 188 aaKnown RBP12.91□□□□□ -0.34
CLN3-216ENST00000565316 CRYGCP07315 174 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 ZNF735P0CB33 412 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 KIR2DS2P43631 304 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 CD81P60033 236 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 ZNF66Q6ZN08 573 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 MFSD4AQ8N468 514 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 TCTEX1D2Q8WW35 142 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 FANCD2OSQ96PS1 177 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 PLEKHA3Q9HB20 300 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 SLC2A8Q9NY64 477 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 TECRQ9NZ01 308 aaKnown RBP12.91□□□□□ -0.34
CLN3-216ENST00000565316 FBXL7Q9UJT9 491 aa12.91□□□□□ -0.34
CLN3-216ENST00000565316 TPPPO94811 219 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 FOLR2P14207 255 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 RPL27AP46776 148 aaKnown RBP12.9□□□□□ -0.34
CLN3-216ENST00000565316 GNG2P59768 71 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 MSMO1Q15800 293 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 C19orf35Q6ZS72 473 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 GPHB5Q86YW7 130 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 SPARTQ8N0X7 666 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 DAPK2Q9UIK4 370 aa12.9□□□□□ -0.34
CLN3-216ENST00000565316 RBMY1BA6NDE4 496 aaKnown RBP12.89□□□□□ -0.35
CLN3-216ENST00000565316 RBMY1EA6NEQ0 496 aaKnown RBP12.89□□□□□ -0.35
CLN3-216ENST00000565316 NDUFB8O95169 186 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 OR2C1O95371 312 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 HLA-AP01891 365 aaKnown RBP12.89□□□□□ -0.35
CLN3-216ENST00000565316 CD7P09564 240 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 RBMY1DP0C7P1 496 aaKnown RBP12.89□□□□□ -0.35
CLN3-216ENST00000565316 PSMB6P28072 239 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 SFXN4Q6P4A7 337 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 LGALS14Q8TCE9 139 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 DYNLRB2Q8TF09 96 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 CCDC140Q96MF4 163 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 FYTTD1Q96QD9 318 aaKnown RBP12.89□□□□□ -0.35
CLN3-216ENST00000565316 RETNQ9HD89 108 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 RHBDL2Q9NX52 303 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 TAS2R8Q9NYW2 309 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 SPATA2Q9UM82 520 aa12.89□□□□□ -0.35
CLN3-216ENST00000565316 DPPA5A6NC42 116 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 HRASP01112 189 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 AREGP15514 252 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 CTRB1P17538 263 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 EDN2P20800 178 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 PSMB9P28065 219 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 CTRB2Q6GPI1 263 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 DEFB125Q8N687 156 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 FCGR1BQ92637 280 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 RRP15Q9Y3B9 282 aaKnown RBP12.88□□□□□ -0.35
CLN3-216ENST00000565316 OR11H12B2RN74 326 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 SCAND1P57086 179 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 RPL8P62917 257 aaKnown RBP12.88□□□□□ -0.35
CLN3-216ENST00000565316 BEST4Q8NFU0 473 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 IL17DQ8TAD2 202 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 GPHA2Q96T91 129 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 BET1LQ9NYM9 111 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 SSR3Q9UNL2 185 aa12.88□□□□□ -0.35
CLN3-216ENST00000565316 HYDINQ4G0P3 5121 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 CGB1A6NKQ9 187 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 A8MWP6 167 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 RBFOX2O43251 390 aaKnown RBP eCLIP12.87□□□□□ -0.35
CLN3-216ENST00000565316 DHFRP00374 187 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 HIST1H1BP16401 226 aaKnown RBP12.87□□□□□ -0.35
CLN3-216ENST00000565316 HLA-GP17693 338 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 CBLN1P23435 193 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 SDC2P34741 201 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 ARL3P36405 182 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 GUCA2BQ16661 112 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 CLEC19AQ6UXS0 136 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 HOGA1Q86XE5 327 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 ZBTB34Q8NCN2 500 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 OR4A5Q8NH83 315 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 SLC25A38Q96DW6 304 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 WDR89Q96FK6 387 aaPredicted RBP12.87□□□□□ -0.35
CLN3-216ENST00000565316 AIFM2Q9BRQ8 373 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 YTHDF1Q9BYJ9 559 aaKnown RBP12.87□□□□□ -0.35
CLN3-216ENST00000565316 WFDC10AQ9H1F0 79 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 SRD5A3Q9H8P0 318 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 CCL28Q9NRJ3 127 aa12.87□□□□□ -0.35
CLN3-216ENST00000565316 ALMS1Q8TCU4 4167 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 IGLV11-55A0A075B6I3 123 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 A0A0A6YYH2 397 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 TMEM213A2RRL7 107 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 A6NJ64 397 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 IGHV3-23P01764 117 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 FCGR2CP31995 323 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms