RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CEP295Q9C0D2 2601 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 RAMP3O60896 148 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 SELLP14151 372 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 MPZP25189 248 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 DPPA3Q6W0C5 159 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 SRD5A3Q9H8P0 318 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 LINC00869P0C866 280 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 RPL27AP46776 148 aaKnown RBP13.7□□□□□ -0.22
CUX1-213ENST00000549414 ARF6P62330 175 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 COA4Q9NYJ1 87 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 CEACAM18A8MTB9 384 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 BSPH1Q075Z2 132 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 C18orf12Q96KH6 178 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 MS4A10Q96PG2 267 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 WDR61Q9GZS3 305 aaKnown RBP13.69□□□□□ -0.22
CUX1-213ENST00000549414 ZNF98A6NK75 572 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 PDE6DO43924 150 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 GOSR1O95249 250 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 RPEL1Q2QD12 228 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 MUC15Q8N387 334 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 FAM222BQ8WU58 562 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 NDFIP1Q9BT67 221 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 SMDT1Q9H4I9 107 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 RFNGQ9Y644 331 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 TGIF2-C20orf24A0A0A6YYL0 155 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 IFNL4K9M1U5 179 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 CD55P08174 381 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 NTF4P34130 210 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 DHRS7BQ6IAN0 325 aaPredicted RBP13.69□□□□□ -0.22
CUX1-213ENST00000549414 LURAP1Q96LR2 239 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 TMEM56-RWDD3S4R434 201 aa13.69□□□□□ -0.22
CUX1-213ENST00000549414 SEC14L6B5MCN3 397 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 PSPNO60542 156 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 IER3P46695 156 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 TFF3Q07654 80 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 AARDQ4LEZ3 155 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 C1orf162Q8NEQ5 155 aaPredicted RBP13.68□□□□□ -0.22
CUX1-213ENST00000549414 RASL11BQ9BPW5 248 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 KIR2DL2P43627 348 aaPredicted RBP13.68□□□□□ -0.22
CUX1-213ENST00000549414 RND2P52198 227 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 RNASEKQ6P5S7 137 aaKnown RBP13.68□□□□□ -0.22
CUX1-213ENST00000549414 DIRC2Q96SL1 478 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 IFT22Q9H7X7 185 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 WFDC1Q9HC57 220 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 OBSL1O75147 1896 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 IGHV1-18A0A0C4DH31 117 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 ARL14EPLP0DKL9 152 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 CHRDL1Q9BU40 450 aa13.68□□□□□ -0.22
CUX1-213ENST00000549414 ANKHD1Q8IWZ3 2542 aaKnown RBP13.67□□□□□ -0.22
CUX1-213ENST00000549414 H3BTX0 84 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 TPPP2P59282 170 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 SSX7Q7RTT5 188 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 MDS2Q8NDY4 140 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 DPF1Q92782 380 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 SGK494Q96LW2 274 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 KBTBD11O94819 623 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 CRISP2P16562 243 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 HIST1H2BAQ96A08 127 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 THYN1Q9P016 225 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 IGHV3OR16-10A0A075B7F0 116 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 CCL3L1P16619 93 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 ANAPC16Q96DE5 110 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 MRPL37Q9BZE1 423 aaKnown RBP13.67□□□□□ -0.22
CUX1-213ENST00000549414 CLEC5AQ9NY25 188 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 MIOXQ9UGB7 285 aa13.67□□□□□ -0.22
CUX1-213ENST00000549414 ZNF497Q6ZNH5 498 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 COL4A3Q01955 1670 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 ETV2O00321 342 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 CDK2AP1O14519 115 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 AMTP48728 403 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 ECSCRQ19T08 205 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 PACRGQ96M98 296 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 WASHC3Q9Y3C0 194 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 NCOA6Q14686 2063 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 ZNF729A6NN14 1252 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 LILRB1Q8NHL6 650 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 C1orf147Q96MC9 270 aaPredicted RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 METTL1Q9UBP6 276 aaKnown RBP13.66□□□□□ -0.22
CUX1-213ENST00000549414 IGHV1-69-2A0A0G2JMI3 117 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 ZNF253O75346 499 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 TMEM42Q69YG0 159 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 OR5AU1Q8NGC0 362 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 FAM57AQ8TBR7 257 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 PARLQ9H300 379 aa13.66□□□□□ -0.22
CUX1-213ENST00000549414 SNURFLB1AK76 121 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 MPDU1O75352 247 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 CSN3P07498 182 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 PEAR1Q5VY43 1037 aaPredicted RBP13.65□□□□□ -0.22
CUX1-213ENST00000549414 OR8I2Q8N0Y5 310 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 PAXXQ9BUH6 204 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 TLN1Q9Y490 2541 aaKnown RBP13.65□□□□□ -0.22
CUX1-213ENST00000549414 CA2P00918 260 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 ZNF324BQ6AW86 544 aaPredicted RBP13.65□□□□□ -0.22
CUX1-213ENST00000549414 NHLRC2Q8NBF2 726 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 CCL20P78556 96 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 ARL2-SNX15V9GYD0 113 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 DOPEY1Q5JWR5 2465 aa13.65□□□□□ -0.22
CUX1-213ENST00000549414 C19orf67A6NJJ6 358 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 RSPO1Q2MKA7 263 aaPredicted RBP13.64□□□□□ -0.23
CUX1-213ENST00000549414 SPSB4Q96A44 273 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms