RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 C1QTNF5Q9BXJ0 243 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 IL36RNQ9UBH0 155 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1B0GTI1 187 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 H3BP45 60 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 RBFOX2O43251 390 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS13D-211ENST00000543710 COX6A1P12074 109 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 IL11P20809 199 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 SRSF4Q08170 494 aaKnown RBP6.66□□□□□ -1.34
VPS13D-211ENST00000543710 AGMATQ9BSE5 352 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 INSL4Q14641 139 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM177Q53S58 311 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 CALYQ9NYX4 217 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 UFC1Q9Y3C8 167 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 MICAL3Q7RTP6 2002 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 GAGE10A6NGK3 116 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 DEFB108AA8MXU0 73 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 H3BRM9 83 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 MGAT2Q10469 447 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 SRSF9Q13242 221 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS13D-211ENST00000543710 CBLN3Q6UW01 205 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 DNM1P46Q6ZS02 220 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 CXorf67Q86X51 503 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-211ENST00000543710 OR5A1Q8NGJ0 315 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 BRCA1P38398 1863 aaKnown RBP6.66□□□□□ -1.34
VPS13D-211ENST00000543710 TRPM7Q96QT4 1865 aa6.66□□□□□ -1.34
VPS13D-211ENST00000543710 MOSPD3O75425 235 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 TRGC2P03986 189 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 CCL3P10147 92 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 SPANXN1Q5VSR9 72 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 DGAT2L7PQ6IED9 249 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 LDLRAD3Q86YD5 345 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 CYB561D1Q8N8Q1 229 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 SOSTQ9BQB4 213 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 C5orf66Q9H5L9 145 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 ZDBF2Q9HCK1 2354 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 IGHV1-69-2A0A0G2JMI3 117 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 TMPRSS2O15393 492 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 GREM1O60565 184 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 MPV17P39210 176 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 EFNB2P52799 333 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 C19orf54Q5BKX5 351 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 TIMM23BQ5SRD1 257 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 NCMAPQ5T1S8 102 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 PVRIGQ6DKI7 326 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 PRNTQ86SH4 94 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 NPIPB11E5RHQ5 1161 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF25P17030 456 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-211ENST00000543710 ANOS1P23352 680 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 GCHFRP30047 84 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 PRSS41Q7RTY9 318 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 CBLN2Q8IUK8 224 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 CIARTQ8N365 385 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-211ENST00000543710 RNF5Q99942 180 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM140Q9NV12 185 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 HSPB7Q9UBY9 170 aa6.65□□□□□ -1.34
VPS13D-211ENST00000543710 SHISA8B8ZZ34 492 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 LEPROTL1O95214 131 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 CELA2BP08218 269 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-211ENST00000543710 EGR1P18146 543 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 OR51G1Q8NGK1 321 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 LHFPL6Q9Y693 200 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 RPS27P42677 84 aaKnown RBP6.65□□□□□ -1.35
VPS13D-211ENST00000543710 ASPHD2Q6ICH7 369 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 DTX1Q86Y01 620 aa6.65□□□□□ -1.35
VPS13D-211ENST00000543710 SRSF8Q9BRL6 282 aaKnown RBP6.65□□□□□ -1.35
VPS13D-211ENST00000543710 TGIF2-C20orf24A0A0A6YYL0 155 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 IGHV3-43A0A0B4J1X8 118 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 IGHV3-43DP0DP04 118 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 SLC50A1Q9BRV3 221 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 C2orf88Q9BSF0 95 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 CLEC7AQ9BXN2 247 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 AKIRIN1Q9H9L7 192 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-211ENST00000543710 FAM60AQ9NP50 221 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 J3QRE1 110 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 FGF16O43320 207 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 THBDP07204 575 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 TCL1AP56279 114 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 LOXL3P58215 753 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 ACSF3Q4G176 576 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF385CQ66K41 422 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-211ENST00000543710 OR13A1Q8NGR1 328 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 SGMS2Q8NHU3 365 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 MS4A6AQ9H2W1 248 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 PRO1933Q9H354 126 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 TRAV1-1A0A0B4J248 108 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 A0A0G2JLM5 398 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 J3QLI3 93 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 CDIPTO14735 213 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 TYMSP04818 313 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 MGPP08493 103 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 ASIPP42127 132 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 OR1N2Q8NGR9 330 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 TMEM170AQ8WVE7 144 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 IGKV1D-42A0A075B6H8 117 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 IGKV1-8A0A0C4DH67 115 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 NPIPB7O75200 414 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 UCP1P25874 307 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 RHOGP84095 191 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 C3orf36Q3SXR2 165 aa6.64□□□□□ -1.35
VPS13D-211ENST00000543710 A0A1B0GV72 72 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms