RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLC39A9Q9NUM3 307 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 TIMM9Q9Y5J7 89 aa13.39□□□□□ -0.27
COL4A1-204ENST00000543140 SMCO3A2RU48 225 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CCL21O00585 134 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 IGKV1-16P04430 117 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 AKR1D1P51857 326 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 KHDC3LQ587J8 217 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 TCF19Q9Y242 345 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CD3EP07766 207 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CT45A6P0DMU7 189 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CT45A5P0DMU8 189 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CT45A7P0DMV0 189 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 BCL2P10415 239 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 VDAC2P45880 294 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-204ENST00000543140 HOXA1P49639 335 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-204ENST00000543140 RAB11AP62491 216 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 CENPVQ7Z7K6 275 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-204ENST00000543140 ZNF429Q86V71 674 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 ZFP82Q8N141 532 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 ZNF709Q8N972 641 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 LHX4Q969G2 390 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 GAL3ST2Q9H3Q3 398 aa13.38□□□□□ -0.27
COL4A1-204ENST00000543140 A0A1W2PPE2 198 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OR10G4Q8NGN3 311 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OR10G9Q8NGN4 311 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OR10G7Q8NGN6 311 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 C2CD4CQ8TF44 421 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 ZNF714Q96N38 554 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 HINT2Q9BX68 163 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 TMPRSS5Q9H3S3 457 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 UNKLQ9H9P5 680 aaKnown RBP13.37□□□□□ -0.27
COL4A1-204ENST00000543140 A0A1W2PPH5 198 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 NDUFB3O43676 98 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OPN1MWP04001 364 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OPN1MW2P0DN77 364 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OPN1MW3P0DN78 364 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 CD1BP29016 333 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 CA7P43166 264 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 UCNP55089 124 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 VWC2Q2TAL6 325 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 OR52E5Q8NH55 327 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 MS4A5Q9H3V2 200 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 CTSZQ9UBR2 303 aa13.37□□□□□ -0.27
COL4A1-204ENST00000543140 C15orf61A6NNL5 157 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 DVL1O14640 695 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 APOBEC3AP31941 199 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-204ENST00000543140 RHEBQ15382 184 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 AVPI1Q5T686 147 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 KDF1Q8NAX2 398 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-204ENST00000543140 TMEM170AQ8WVE7 144 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 RAB39BQ96DA2 213 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 ADTRPQ96IZ2 230 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 CISD1Q9NZ45 108 aaKnown RBP13.36□□□□□ -0.27
COL4A1-204ENST00000543140 REG1BP48304 166 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 MEF2CQ06413 473 aaPredicted RBP13.36□□□□□ -0.27
COL4A1-204ENST00000543140 CDSNQ15517 529 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 LRRC10Q5BKY1 277 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 LINC00518Q8N0U6 118 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 C15orf54Q8N8G6 183 aa13.36□□□□□ -0.27
COL4A1-204ENST00000543140 SRRM4A7MD48 611 aaKnown RBP13.35□□□□□ -0.27
COL4A1-204ENST00000543140 LYNX1G3V0Z9 82 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 NDUFA2O43678 99 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 IFNA4P05014 189 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 LYNX1P0DP58 116 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 FLI1Q01543 452 aaPredicted RBP13.35□□□□□ -0.27
COL4A1-204ENST00000543140 HEPN1Q6WQI6 88 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 OR13D1Q8NGV5 346 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 HIST1H2BAQ96A08 127 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 SLC35D1Q9NTN3 355 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 IGHV1-69-2A0A0G2JMI3 117 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 ZNF727A8MUV8 499 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 HRASP01112 189 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 MDKP21741 143 aaPredicted RBP13.35□□□□□ -0.27
COL4A1-204ENST00000543140 RPP30P78346 268 aaKnown RBP13.35□□□□□ -0.27
COL4A1-204ENST00000543140 FAM24BQ8N5W8 94 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 TMEM14BQ9NUH8 114 aa13.35□□□□□ -0.27
COL4A1-204ENST00000543140 TNFRSF13BO14836 293 aaPredicted RBP13.34□□□□□ -0.27
COL4A1-204ENST00000543140 TAGLN2P37802 199 aaKnown RBP13.34□□□□□ -0.27
COL4A1-204ENST00000543140 DLK1P80370 383 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 KLRB1Q12918 225 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 GCSAMLQ5JQS6 135 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 NIPSNAP3BQ9BS92 247 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 MRPL20Q9BYC9 149 aaKnown RBP13.34□□□□□ -0.27
COL4A1-204ENST00000543140 DCHS2Q6V1P9 2916 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 RTL8BQ17RB0 113 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 PDLIM3Q53GG5 364 aaPredicted RBP13.34□□□□□ -0.27
COL4A1-204ENST00000543140 Q8N7P7 452 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 RAB24Q969Q5 203 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 WDR83OSQ9Y284 106 aa13.34□□□□□ -0.27
COL4A1-204ENST00000543140 hCG_1809904A0A1W2PP81 198 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 A0A1W2PR64 198 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 A0A1W2PRV1 198 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 C17orf112F2Z3M2 114 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 SIAH2O43255 324 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 HSPE1P61604 102 aaKnown RBP13.33□□□□□ -0.28
COL4A1-204ENST00000543140 DIAPH2-AS1Q14236 149 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 TMEM30BQ3MIR4 351 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 FAM90A2PQ658T7 463 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 CA5BP1Q8WTZ4 195 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 GATAD1Q8WUU5 269 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms