RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HRH1P35367 487 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 KLF5Q13887 457 aaPredicted RBP8.14□□□□□ -1.11
CD44-227ENST00000528086 DEFB121Q5J5C9 76 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 SSX9Q7RTT3 188 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 TMEM17Q86X19 198 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 MMD2Q8IY49 270 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 SPAG16Q8N0X2 631 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 OR4S2Q8NH73 311 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 ACOT12Q8WYK0 555 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 DPF1Q92782 380 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 TMEM68Q96MH6 324 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 CMTM3Q96MX0 182 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 OR2A7Q96R45 310 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 ABHD1Q96SE0 405 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 B9D2Q9BPU9 175 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 DCUN1D5Q9BTE7 237 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 STAB2Q8WWQ8 2551 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 DNAH7Q8WXX0 4024 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 KMT2CQ8NEZ4 4911 aaKnown RBP8.13□□□□□ -1.11
CD44-227ENST00000528086 DBX1A6NMT0 343 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 BMPR1BO00238 502 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 SPNP16150 400 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 RORCP51449 518 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 MECP2P51608 486 aaKnown RBP8.13□□□□□ -1.11
CD44-227ENST00000528086 OR2B8PP59922 312 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 RHOGP84095 191 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 AADACL3Q5VUY0 350 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 SNX29P2Q8IUI4 249 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 ZBTB34Q8NCN2 500 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 OR51H1Q8NH63 302 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 ZNF2Q9BSG1 426 aaPredicted RBP8.13□□□□□ -1.11
CD44-227ENST00000528086 IFT46Q9NQC8 304 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 ZNF355PQ9NSJ1 428 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 COA4Q9NYJ1 87 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 MRPS7Q9Y2R9 242 aaKnown RBP8.13□□□□□ -1.11
CD44-227ENST00000528086 PRELID3BQ9Y3B1 194 aa8.13□□□□□ -1.11
CD44-227ENST00000528086 IGLC7A0M8Q6 106 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 UPK2O00526 184 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CTDSP2O14595 271 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 NDUFB8O95169 186 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 IGKV1-39P01597 117 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 IGKV1D-39P04432 117 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CRYGCP07315 174 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CSN3P07498 182 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 RPA2P15927 270 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CTRB1P17538 263 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 RPL27AP46776 148 aaKnown RBP8.12□□□□□ -1.11
CD44-227ENST00000528086 CBX3Q13185 183 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CTRB2Q6GPI1 263 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 Q8N1Y9 231 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 OR52I2Q8NH67 350 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 FCAMRQ8WWV6 532 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 MRGPRFQ96AM1 343 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 ZNF414Q96IQ9 312 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 CCDC140Q96MF4 163 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 THAP7Q9BT49 309 aaPredicted RBP8.12□□□□□ -1.11
CD44-227ENST00000528086 MRPS26Q9BYN8 205 aaKnown RBP8.12□□□□□ -1.11
CD44-227ENST00000528086 SLC2A9Q9NRM0 540 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 BET1LQ9NYM9 111 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 KLK11Q9UBX7 282 aa8.12□□□□□ -1.11
CD44-227ENST00000528086 ZNF256Q9Y2P7 627 aaPredicted RBP8.12□□□□□ -1.11
CD44-227ENST00000528086 C13orf42A0A1B0GVH6 325 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 NPIPB5A8MRT5 1133 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 M0QYG6 137 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 SAP30O75446 220 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 OR2J3O76001 311 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 IGLV1-51P01701 117 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 RLN1P04808 185 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 REG1AP05451 166 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 ZNF182P17025 639 aaPredicted RBP8.11□□□□□ -1.11
CD44-227ENST00000528086 HLA-GP17693 338 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 INSL3P51460 131 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 MFAP2P55001 183 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 SYNJ2BPP57105 145 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 RPL8P62917 257 aaKnown RBP8.11□□□□□ -1.11
CD44-227ENST00000528086 RNASE12Q5GAN4 147 aaKnown RBP8.11□□□□□ -1.11
CD44-227ENST00000528086 ZNF429Q86V71 674 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 LHFPL1Q86WI0 220 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 OR10W1Q8NGF6 305 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 OR4D10Q8NGI6 311 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 OR5H2Q8NGV7 314 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 DYNC2LI1Q8TCX1 351 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 USMG5Q96IX5 58 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 PHB2Q99623 299 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 SPIN2AQ99865 258 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 SPIN2BQ9BPZ2 258 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 PLEKHA2Q9HB19 425 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 SCPEP1Q9HB40 452 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 RANGRFQ9HD47 186 aaPredicted RBP8.11□□□□□ -1.11
CD44-227ENST00000528086 PEF1Q9UBV8 284 aaKnown RBP8.11□□□□□ -1.11
CD44-227ENST00000528086 S4R3C0 116 aa8.11□□□□□ -1.11
CD44-227ENST00000528086 IGLV11-55A0A075B6I3 123 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.1□□□□□ -1.11
CD44-227ENST00000528086 A0A0G2JLM5 398 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 IZUMO1RA6ND01 250 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 HPRT1P00492 218 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 HLA-AP01891 365 aaKnown RBP8.1□□□□□ -1.11
CD44-227ENST00000528086 F2RP25116 425 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 PSMB6P28072 239 aa8.1□□□□□ -1.11
CD44-227ENST00000528086 MAS1LP35410 378 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms